Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 123456]

►Cenum
CCDPL.Base.IOStream.OpenMode
CCDPL.Biomol.PDBData.RecordType
CCDPL.Chem.ChEMBLStandardizer.ChangeFlags
CCDPL.Chem.MatchConstraint.Relation	Defines constants for the specification of relational constraints on the values of query/target attribute pairs
CCDPL.Chem.MatchConstraintList.Type	Defines constants that describe the logical type of the match constraint list
CCDPL.Chem.ProtonationStateStandardizer.Flavor
CCDPL.Chem.TautomerGenerator.Mode
CCDPL.Descr.MoleculeAutoCorr2DDescriptorCalculator.Mode
CCDPL.ForceField.MMFF94VanDerWaalsInteraction.HDonorAcceptorType
CCDPL.GRAIL.BindingAffinityCalculator.AffinityMeasure
CCDPL.GRAIL.GRAILDescriptorCalculator.ElementIndex
CCDPL.GRAIL.GRAILXDescriptorCalculator.ElementIndex
CCDPL.Math.DRegularSpatialGrid.DataMode
CCDPL.Math.DVectorBFGSMinimizer.Status
CCDPL.Math.FRegularSpatialGrid.DataMode
CCDPL.Math.FVectorBFGSMinimizer.Status
CCDPL.Math.Vector2DArrayBFGSMinimizer.Status
CCDPL.Math.Vector2FArrayBFGSMinimizer.Status
CCDPL.Math.Vector3DArrayBFGSMinimizer.Status
CCDPL.Math.Vector3FArrayBFGSMinimizer.Status
CCDPL.Pharm.DefaultPharmacophoreGenerator.Configuration	Flags controlling feature generation
CCDPL.Pharm.PatternBasedFeatureGenerator.PatternAtomLabelFlag
CCDPL.Pharm.ScreeningDBCreator.Mode
CCDPL.Pharm.ScreeningProcessor.HitReportMode
CCDPL.Shape.ScreeningSettings.AlignmentMode
CCDPL.Shape.ScreeningSettings.ColorFeatureType
CCDPL.Shape.ScreeningSettings.ScreeningMode
CCDPL.Vis.Brush.Style	Defines constants for supported fill pattern styles
CCDPL.Vis.Path2D.FillRule	Specifies which method to use for filling closed shapes described by the Path2D object
CCDPL.Vis.Pen.CapStyle	Defines constants for supported line cap styles
CCDPL.Vis.Pen.JoinStyle	Defines constants for supported line join styles
CCDPL.Vis.Pen.LineStyle	Defines constants for supported line styles
►Cinstance
CCDPL.Base.Any	A safe, type checked container for arbitrary data of variable type
►CCDPL.Base.ControlParameterContainer	A class providing methods for the storage and lookup of control-parameter values
CCDPL.Base.ControlParameterList	A data structure for the storage and lookup of control-parameter values
►CCDPL.Base.DataIOBase	Provides infrastructure for the registration of I/O callback functions
►CCDPL.Chem.MolecularGraphWriterBase	An interface for writing data objects of type Chem.MolecularGraph to an arbitrary data sink
CCDPL.Biomol.FileMMTFBZ2MolecularGraphWriter
CCDPL.Biomol.FileMMTFGZMolecularGraphWriter
CCDPL.Biomol.FileMMTFMolecularGraphWriter
CCDPL.Biomol.FilePDBBZ2MolecularGraphWriter
CCDPL.Biomol.FilePDBGZMolecularGraphWriter
CCDPL.Biomol.FilePDBMolecularGraphWriter
CCDPL.Biomol.MMTFBZ2MolecularGraphWriter
CCDPL.Biomol.MMTFGZMolecularGraphWriter
CCDPL.Biomol.MMTFMolecularGraphWriter	A writer for molecular graph data in the Macromolecular Transmission Format (MMTF) [MMTF]
CCDPL.Biomol.PDBBZ2MolecularGraphWriter
CCDPL.Biomol.PDBGZMolecularGraphWriter
CCDPL.Biomol.PDBMolecularGraphWriter	A writer for molecular graph data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Chem.CDFBZ2MolecularGraphWriter
CCDPL.Chem.CDFGZMolecularGraphWriter
CCDPL.Chem.CDFMolecularGraphWriter	A writer for molecular graph data in the native I/O format of the CDPL
CCDPL.Chem.FileCDFBZ2MolecularGraphWriter
CCDPL.Chem.FileCDFGZMolecularGraphWriter
CCDPL.Chem.FileCDFMolecularGraphWriter
CCDPL.Chem.FileINCHIMolecularGraphWriter
CCDPL.Chem.FileJMEMolecularGraphWriter
CCDPL.Chem.FileMOL2BZ2MolecularGraphWriter
CCDPL.Chem.FileMOL2GZMolecularGraphWriter
CCDPL.Chem.FileMOL2MolecularGraphWriter
CCDPL.Chem.FileMOLMolecularGraphWriter
CCDPL.Chem.FileSDFBZ2MolecularGraphWriter
CCDPL.Chem.FileSDFGZMolecularGraphWriter
CCDPL.Chem.FileSDFMolecularGraphWriter
CCDPL.Chem.FileSMARTSMolecularGraphWriter
CCDPL.Chem.FileSMILESBZ2MolecularGraphWriter
CCDPL.Chem.FileSMILESGZMolecularGraphWriter
CCDPL.Chem.FileSMILESMolecularGraphWriter
CCDPL.Chem.FileXYZBZ2MolecularGraphWriter
CCDPL.Chem.FileXYZGZMolecularGraphWriter
CCDPL.Chem.FileXYZMolecularGraphWriter
CCDPL.Chem.INCHIMolecularGraphWriter	A writer for molecular graph data in the IUPAC International Chemical Identifier (InChI) [INCHI] format
CCDPL.Chem.JMEMolecularGraphWriter	A writer for molecular graph data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.MOL2BZ2MolecularGraphWriter
CCDPL.Chem.MOL2GZMolecularGraphWriter
CCDPL.Chem.MOL2MolecularGraphWriter
CCDPL.Chem.MolecularGraphWriter	Writer for molecule data in any supported format
CCDPL.Chem.MOLMolecularGraphWriter	A writer for molecular graph data in the MDL Mol-File [CTFILE] format
CCDPL.Chem.SDFBZ2MolecularGraphWriter
CCDPL.Chem.SDFGZMolecularGraphWriter
CCDPL.Chem.SDFMolecularGraphWriter	A writer for molecular graph data in the MDL Mol-File [CTFILE] format
CCDPL.Chem.SMARTSMolecularGraphWriter	A writer for molecular graph data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2MolecularGraphWriter
CCDPL.Chem.SMILESGZMolecularGraphWriter
CCDPL.Chem.SMILESMolecularGraphWriter	A writer for molecular graph data in the Daylight SMILES [SMILES] format
CCDPL.Chem.XYZBZ2MolecularGraphWriter
CCDPL.Chem.XYZGZMolecularGraphWriter
CCDPL.Chem.XYZMolecularGraphWriter
CCDPL.Pharm.PSDMolecularGraphWriter	A writer for molecular graph data in the PSD-format of the CDPL
CCDPL.Vis.FilePDFMolecularGraphWriter
CCDPL.Vis.FilePNGMolecularGraphWriter
CCDPL.Vis.FilePSMolecularGraphWriter
CCDPL.Vis.FileSVGMolecularGraphWriter
CCDPL.Vis.PDFMolecularGraphWriter	Creates 2D structure diagrams of molecular graphs in the Portable Document Format (PDF) [WPDF]
CCDPL.Vis.PNGMolecularGraphWriter	Creates 2D structure diagrams of molecular graphs in the Portable Network Graphics (PNG) [WPNG] format
CCDPL.Vis.PSMolecularGraphWriter	Creates 2D structure diagrams of molecular graphs in the PostScript (PS) [WPS] format
CCDPL.Vis.SVGMolecularGraphWriter	Creates 2D structure diagrams of molecular graphs in the Scalable Vector Graphics (SVG) [WSVG] format
►CCDPL.Chem.MoleculeReaderBase	An interface for reading data objects of type Chem.Molecule from an arbitrary data source
CCDPL.Biomol.FileMMTFBZ2MoleculeReader
CCDPL.Biomol.FileMMTFGZMoleculeReader
CCDPL.Biomol.FileMMTFMoleculeReader
CCDPL.Biomol.FilePDBBZ2MoleculeReader
CCDPL.Biomol.FilePDBGZMoleculeReader
CCDPL.Biomol.FilePDBMoleculeReader
CCDPL.Biomol.MMTFBZ2MoleculeReader
CCDPL.Biomol.MMTFGZMoleculeReader
CCDPL.Biomol.MMTFMoleculeReader	A reader for molecule data in the Macromolecular Transmission Format (MMTF) [MMTF]
CCDPL.Biomol.PDBBZ2MoleculeReader
CCDPL.Biomol.PDBGZMoleculeReader
CCDPL.Biomol.PDBMoleculeReader	A reader for molecule data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Chem.CDFBZ2MoleculeReader
CCDPL.Chem.CDFGZMoleculeReader
CCDPL.Chem.CDFMoleculeReader	A reader for molecule data in the native I/O format of the CDPL
CCDPL.Chem.CompoundMoleculeReader	CompoundDataReader
CCDPL.Chem.FileCDFBZ2MoleculeReader
CCDPL.Chem.FileCDFGZMoleculeReader
CCDPL.Chem.FileCDFMoleculeReader
CCDPL.Chem.FileINCHIMoleculeReader
CCDPL.Chem.FileJMEMoleculeReader
CCDPL.Chem.FileMOL2BZ2MoleculeReader
CCDPL.Chem.FileMOL2GZMoleculeReader
CCDPL.Chem.FileMOL2MoleculeReader
CCDPL.Chem.FileMOLMoleculeReader
CCDPL.Chem.FileSDFBZ2MoleculeReader
CCDPL.Chem.FileSDFGZMoleculeReader
CCDPL.Chem.FileSDFMoleculeReader
CCDPL.Chem.FileSMARTSMoleculeReader
CCDPL.Chem.FileSMILESBZ2MoleculeReader
CCDPL.Chem.FileSMILESGZMoleculeReader
CCDPL.Chem.FileSMILESMoleculeReader
CCDPL.Chem.FileXYZBZ2MoleculeReader
CCDPL.Chem.FileXYZGZMoleculeReader
CCDPL.Chem.FileXYZMoleculeReader
CCDPL.Chem.INCHIMoleculeReader	A reader for molecule data in the IUPAC International Chemical Identifier (InChI) [INCHI] format
CCDPL.Chem.JMEMoleculeReader	A reader for molecule data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.MOL2BZ2MoleculeReader
CCDPL.Chem.MOL2GZMoleculeReader
CCDPL.Chem.MOL2MoleculeReader
CCDPL.Chem.MoleculeReader	Reader for molecule data in any supported format
CCDPL.Chem.MOLMoleculeReader	A reader for molecule data in the MDL Mol-File [CTFILE] format
CCDPL.Chem.SDFBZ2MoleculeReader
CCDPL.Chem.SDFGZMoleculeReader
CCDPL.Chem.SDFMoleculeReader	A Reader for molecule data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SMARTSMoleculeReader	A reader for molecule data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2MoleculeReader
CCDPL.Chem.SMILESGZMoleculeReader
CCDPL.Chem.SMILESMoleculeReader	A reader for molecule data in the Daylight SMILES [SMILES] format
CCDPL.Chem.XYZBZ2MoleculeReader
CCDPL.Chem.XYZGZMoleculeReader
CCDPL.Chem.XYZMoleculeReader
CCDPL.ConfGen.CFLMoleculeReader	A reader for molecule data in the native I/O format of the CDPL
CCDPL.ConfGen.FileCFLMoleculeReader
CCDPL.Pharm.PSDMoleculeReader	A reader for molecule data in the PSD-format of the CDPL
►CCDPL.Chem.ReactionReaderBase	An interface for reading data objects of type Chem.Reaction from an arbitrary data source
CCDPL.Chem.CDFBZ2ReactionReader
CCDPL.Chem.CDFGZReactionReader
CCDPL.Chem.CDFReactionReader	A reader for reaction data in the native I/O format of the CDPL
CCDPL.Chem.CompoundReactionReader	CompoundDataReader
CCDPL.Chem.FileCDFBZ2ReactionReader
CCDPL.Chem.FileCDFGZReactionReader
CCDPL.Chem.FileCDFReactionReader
CCDPL.Chem.FileJMEReactionReader
CCDPL.Chem.FileRDFBZ2ReactionReader
CCDPL.Chem.FileRDFGZReactionReader
CCDPL.Chem.FileRDFReactionReader
CCDPL.Chem.FileSMARTSReactionReader
CCDPL.Chem.FileSMILESBZ2ReactionReader
CCDPL.Chem.FileSMILESGZReactionReader
CCDPL.Chem.FileSMILESReactionReader
CCDPL.Chem.JMEReactionReader	A reader for reaction data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.RDFBZ2ReactionReader
CCDPL.Chem.RDFGZReactionReader
CCDPL.Chem.RDFReactionReader	A reader for reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.ReactionReader	Reader for reaction data in any supported format
CCDPL.Chem.RXNReactionReader	A reader for reaction data in the MDL Rxn-File [CTFILE] format
CCDPL.Chem.SMARTSReactionReader	A reader for reaction data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2ReactionReader
CCDPL.Chem.SMILESGZReactionReader
CCDPL.Chem.SMILESReactionReader	A reader for reaction data in the Daylight SMILES [SMILES] format
►CCDPL.Chem.ReactionWriterBase	An interface for writing data objects of type Chem.Reaction to an arbitrary data sink
CCDPL.Chem.CDFBZ2ReactionWriter
CCDPL.Chem.CDFGZReactionWriter
CCDPL.Chem.CDFReactionWriter	A writer for molecular graph data in the native I/O format of the CDPL
CCDPL.Chem.FileCDFBZ2ReactionWriter
CCDPL.Chem.FileCDFGZReactionWriter
CCDPL.Chem.FileCDFReactionWriter
CCDPL.Chem.FileJMEReactionWriter
CCDPL.Chem.FileRDFBZ2ReactionWriter
CCDPL.Chem.FileRDFGZReactionWriter
CCDPL.Chem.FileRDFReactionWriter
CCDPL.Chem.FileRXNReactionWriter
CCDPL.Chem.FileSMARTSReactionWriter
CCDPL.Chem.FileSMILESBZ2ReactionWriter
CCDPL.Chem.FileSMILESGZReactionWriter
CCDPL.Chem.FileSMILESReactionWriter
CCDPL.Chem.JMEReactionWriter	A writer for reaction data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.RDFBZ2ReactionWriter
CCDPL.Chem.RDFGZReactionWriter
CCDPL.Chem.RDFReactionWriter	A writer for reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.ReactionWriter	Writer for reaction data in any supported format
CCDPL.Chem.RXNReactionWriter	A writer for reaction data in the MDL Rxn-File [CTFILE] format
CCDPL.Chem.SMARTSReactionWriter	A writer for reaction data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2ReactionWriter
CCDPL.Chem.SMILESGZReactionWriter
CCDPL.Chem.SMILESReactionWriter	A writer for reaction data in the Daylight SMILES [SMILES] format
CCDPL.Vis.FilePDFReactionWriter
CCDPL.Vis.FilePNGReactionWriter
CCDPL.Vis.FilePSReactionWriter
CCDPL.Vis.FileSVGReactionWriter
CCDPL.Vis.PDFReactionWriter	Creates 2D depictions of chemical reactions in the Portable Document Format (PDF) [WPDF]
CCDPL.Vis.PNGReactionWriter	Creates 2D depictions of chemical reactions in the Portable Network Graphics (PNG) [WPNG] format
CCDPL.Vis.PSReactionWriter	Creates 2D depictions of chemical reactions in the PostScript (PS) [WPS] format
CCDPL.Vis.SVGReactionWriter	Creates 2D depictions of chemical reactions in the Scalable Vector Graphics (SVG) [WSVG] format
►CCDPL.Grid.DRegularGridReaderBase	An interface for reading data objects of type Grid.DRegularGrid from an arbitrary data source
CCDPL.Grid.CDFBZ2DRegularGridReader
CCDPL.Grid.CDFDRegularGridReader	A reader for spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridReader
CCDPL.Grid.CompoundDRegularGridReader	CompoundDataReader
CCDPL.Grid.DRegularGridReader	Reader for grid data of type Grid.DRegularGrid in any supported format
CCDPL.Grid.FileCDFBZ2DRegularGridReader
CCDPL.Grid.FileCDFDRegularGridReader
CCDPL.Grid.FileCDFGZDRegularGridReader
►CCDPL.Grid.DRegularGridSetReaderBase	An interface for reading data objects of type Grid.DRegularGridSet from an arbitrary data source
CCDPL.Grid.CDFBZ2DRegularGridSetReader
CCDPL.Grid.CDFDRegularGridSetReader	A reader for spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridSetReader
CCDPL.Grid.CompoundDRegularGridSetReader	CompoundDataReader
CCDPL.Grid.DRegularGridSetReader	Reader for grid set data of type Grid.DRegularGridSet in any supported format
CCDPL.Grid.FileCDFBZ2DRegularGridSetReader
CCDPL.Grid.FileCDFDRegularGridSetReader
CCDPL.Grid.FileCDFGZDRegularGridSetReader
►CCDPL.Grid.DRegularGridSetWriterBase	An interface for writing data objects of type Grid.DRegularGridSet to an arbitrary data sink
CCDPL.Grid.CDFBZ2DRegularGridSetWriter
CCDPL.Grid.CDFDRegularGridSetWriter	A writer for spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridSetWriter
CCDPL.Grid.DRegularGridSetWriter	Writer for grid set data of type Grid.DRegularGridSet in any supported format
CCDPL.Grid.FileCDFBZ2DRegularGridSetWriter
CCDPL.Grid.FileCDFDRegularGridSetWriter
CCDPL.Grid.FileCDFGZDRegularGridSetWriter
►CCDPL.Grid.DRegularGridWriterBase	An interface for writing data objects of type Grid.DRegularGrid to an arbitrary data sink
CCDPL.Grid.CDFBZ2DRegularGridWriter
CCDPL.Grid.CDFDRegularGridWriter	A writer for spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridWriter
CCDPL.Grid.DRegularGridWriter	Writer for grid data of type Grid.DRegularGrid in any supported format
CCDPL.Grid.FileCDFBZ2DRegularGridWriter
CCDPL.Grid.FileCDFDRegularGridWriter
CCDPL.Grid.FileCDFGZDRegularGridWriter
►CCDPL.Pharm.FeatureContainerWriterBase	An interface for writing data objects of type Pharm.FeatureContainer to an arbitrary data sink
CCDPL.Pharm.CDFBZ2FeatureContainerWriter
CCDPL.Pharm.CDFFeatureContainerWriter	A writer for feature container data in the native I/O format of the CDPL
CCDPL.Pharm.CDFGZFeatureContainerWriter
CCDPL.Pharm.FeatureContainerWriter	Writer for pharmacophore data in any supported format
CCDPL.Pharm.FileCDFBZ2FeatureContainerWriter
CCDPL.Pharm.FileCDFFeatureContainerWriter
CCDPL.Pharm.FileCDFGZFeatureContainerWriter
CCDPL.Pharm.FilePMLFeatureContainerWriter
CCDPL.Pharm.PMLFeatureContainerWriter	A writer for feature container data in the native I/O format of LigandScout
►CCDPL.Pharm.PharmacophoreReaderBase	An interface for reading data objects of type Pharm.Pharmacophore from an arbitrary data source
CCDPL.Pharm.CDFBZ2PharmacophoreReader
CCDPL.Pharm.CDFGZPharmacophoreReader
CCDPL.Pharm.CDFPharmacophoreReader	A reader for pharmacophore data in the native I/O format of the CDPL
CCDPL.Pharm.CompoundPharmacophoreReader	CompoundDataReader
CCDPL.Pharm.FileCDFBZ2PharmacophoreReader
CCDPL.Pharm.FileCDFGZPharmacophoreReader
CCDPL.Pharm.FileCDFPharmacophoreReader
CCDPL.Pharm.FilePMLPharmacophoreReader
CCDPL.Pharm.PharmacophoreReader	Reader for pharmacophore data in any supported format
CCDPL.Pharm.PMLPharmacophoreReader	A reader for pharmacophore data in the native I/O format of LigandScout
CCDPL.Pharm.PSDPharmacophoreReader	A reader for pharmacophore data in the PSD-format of the CDPL
►CCDPL.Vis.View2D	The abstract base of classes implementing the 2D visualization of data objects
CCDPL.Vis.ReactionView2D	Implements the 2D visualization of chemical reactions
CCDPL.Vis.StructureView2D	Implements the 2D visualization of chemical structures
CCDPL.Base.DataFormat	Provides meta-information about a particular data storage format
CCDPL.Base.DataFormat.FileExtensionSequence
►CCDPL.Base.IStream
►CCDPL.Base.IOStream
CCDPL.Base.FileIOStream
CCDPL.Base.StringIOStream
CCDPL.Util.BZip2IOStream
CCDPL.Util.GZipIOStream
CCDPL.Util.BZip2IStream
CCDPL.Util.GZipIStream
CCDPL.Base.LookupKey	An unique lookup key for control-parameter and property values
►CCDPL.Base.OStream
CCDPL.Base.IOStream
CCDPL.Util.BZip2OStream
CCDPL.Util.GZipOStream
►CCDPL.Base.PropertyContainer	A class providing methods for the storage and lookup of object properties
►CCDPL.Chem.Bond	Bond
CCDPL.Chem.BasicBond	BasicBond
►CCDPL.Chem.Entity3D	Entity3D
►CCDPL.Chem.Atom	Atom
CCDPL.Chem.BasicAtom	BasicAtom
►CCDPL.Pharm.Feature	Feature
CCDPL.Pharm.BasicFeature	BasicFeature
►CCDPL.Chem.MolecularGraph	MolecularGraph
►CCDPL.Chem.Fragment	Fragment
►CCDPL.Biomol.HierarchyViewNode	HierarchyViewNode
CCDPL.Biomol.HierarchyViewChain	HierarchyViewChain
CCDPL.Biomol.HierarchyViewFragment	HierarchyViewFragment
CCDPL.Biomol.HierarchyViewModel	HierarchyViewModel
CCDPL.Chem.AromaticSubstructure	Implements the perception of aromatic atoms and bonds in a molecular graph
CCDPL.Chem.CyclicSubstructure	Implements the perception of ring atoms and bonds in a molecular graph
►CCDPL.Chem.Molecule	Molecule
CCDPL.Chem.BasicMolecule	BasicMolecule
CCDPL.ConfGen.CanonicalFragment	CanonicalFragment
►CCDPL.Chem.Reaction	Reaction
CCDPL.Chem.BasicReaction	BasicReaction
►CCDPL.Grid.AttributedGrid	AttributedGrid
►CCDPL.Grid.DSpatialGrid	SpatialGrid
CCDPL.Grid.DRegularGrid	RegularGrid
►CCDPL.Grid.FSpatialGrid	SpatialGrid
CCDPL.Grid.FRegularGrid	RegularGrid
►CCDPL.Pharm.FeatureContainer	FeatureContainer
CCDPL.Pharm.FeatureSet	FeatureSet
►CCDPL.Pharm.Pharmacophore	Pharmacophore
CCDPL.Pharm.BasicPharmacophore	BasicPharmacophore
CCDPL.Shape.GaussianShape	A data type for the descripton of arbitrary shapes composed of spheres approximated by gaussian functions
CCDPL.Base.VoidDataIOBaseFunctor
CCDPL.Base.VoidFunctor
CCDPL.Base.VoidLookupKeyAnyFunctor
CCDPL.Base.VoidLookupKeyFunctor
CCDPL.Biomol.AtomProperty	Provides keys for built-in Biomol.Atom properties
CCDPL.Biomol.AtomPropertyDefault	Provides default values for built-in Chem.Atom properties
CCDPL.Biomol.AtomPropertyFlag	Provides flags for the specification of basic Chem.Atom properties
CCDPL.Biomol.ControlParameter	Provides keys for built-in control-parameters
CCDPL.Biomol.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.Biomol.DataFormat	Provides preinitialized Base.DataFormat objects for all supported biopolymer data formats
CCDPL.Biomol.HierarchyView	A datastructure allowing a hierarchical view on biological macromolecules
CCDPL.Biomol.MolecularGraphPointerStringFunctor
CCDPL.Biomol.MolecularGraphProperty	Provides keys for built-in Biomol.MolecularGraph properties
CCDPL.Biomol.MolecularGraphPropertyDefault	Provides default values for built-in Chem.MolecularGraph properties
CCDPL.Biomol.PDBData	A datastructure for the storage of imported PDB data records (see [CTFILE])
CCDPL.Biomol.PDBFormatVersion	Provides constants for the specification of the Brookhaven Protein Data Bank (PDB) [PDB] format version
CCDPL.Biomol.ResidueDictionary	A global dictionary for the lookup of meta-data associated with the residues in biological macromolecules
CCDPL.Biomol.ResidueDictionary.Entry
CCDPL.Biomol.ResidueType
CCDPL.Chem.Atom2DCoordinatesCalculator	Atom2DCoordinatesCalculator
CCDPL.Chem.Atom3DCoordinatesFunction	A generic wrapper class used to store a user-defined Chem.Atom 3D-coordinates function
CCDPL.Chem.Atom3DCoordinatesFunctor	Atom3DCoordinatesFunctor
CCDPL.Chem.Atom.AtomSequence
CCDPL.Chem.Atom.BondSequence
CCDPL.Chem.AtomArray3DCoordinatesFunctor	AtomArray3DCoordinatesFunctor
CCDPL.Chem.AtomBondMapping	A data structure for the common storage of related atom to atom and bond to bond mappings
CCDPL.Chem.AtomConfiguration	Provides constants that are used to specify the R/S configuration of atoms
CCDPL.Chem.AtomConformer3DCoordinatesFunctor	AtomConformer3DCoordinatesFunctor
CCDPL.Chem.AtomDictionary	A global dictionary for the lookup of data associated with the atom types defined in namespace Chem.AtomType
CCDPL.Chem.AtomDictionary.Entry
CCDPL.Chem.AtomMapping	A data type for the storage and lookup of arbitrary atom to atom mappings
CCDPL.Chem.AtomMatchConstraint	Provides numerical identifiers for built-in Chem.Atom matching constraints
►CCDPL.Chem.AtomMatchExpression	A generic boolean expression interface for the implementation of query/target object equivalence tests in molecular graph matching algorithms
CCDPL.Chem.AtomConfigurationMatchExpression	AtomConfigurationMatchExpression
CCDPL.Chem.AtomEnvironmentMatchExpression	AtomEnvironmentMatchExpression
►CCDPL.Chem.AtomMatchExpressionList	A container for the storage and evaluation of logical match expression lists
CCDPL.Chem.ANDAtomMatchExpressionList	ANDAtomMatchExpressionList
CCDPL.Chem.ORAtomMatchExpressionList	ORAtomMatchExpressionList
CCDPL.Chem.AtomTypeMatchExpression	AtomTypeMatchExpression
CCDPL.Chem.NOTAtomMatchExpression	NOTAtomMatchExpression
CCDPL.Chem.AtomMatchExpressionPtrAtomFunctor
CCDPL.Chem.AtomPredicate	A generic wrapper class used to store a user-defined atom predicate
CCDPL.Chem.AtomProperty	Provides keys for built-in Chem.Atom properties
CCDPL.Chem.AtomPropertyDefault	Provides default values for built-in Chem.Atom properties
CCDPL.Chem.AtomPropertyFlag	Provides flags for the specification of basic Chem.Atom properties
CCDPL.Chem.AtomType	Provides constants for the specification of the chemical element or generic type of an atom
CCDPL.Chem.AutomorphismGroupSearch	AutomorphismGroupSearch
CCDPL.Chem.BemisMurckoAnalyzer	BemisMurckoAnalyzer
CCDPL.Chem.Bond.AtomSequence
CCDPL.Chem.BondConfiguration	Provides constants that are used to specify the cis/trans configuration of bonds
►CCDPL.Chem.BondContainer	A common interface for data-structures that support a random access to stored Chem.Bond instances
CCDPL.Chem.Atom	Atom
CCDPL.Chem.MolecularGraph	MolecularGraph
CCDPL.Chem.BondDirection	Provides constants for the specification of directional bonds in Daylight SMILES and SMARTS strings
CCDPL.Chem.BondMapping	A data type for the storage and lookup of arbitrary bond to bond mappings
CCDPL.Chem.BondMatchConstraint	Provides numerical identifiers for built-in Chem.Bond matching constraints and flags for the specification of bond orders
►CCDPL.Chem.BondMatchExpression	A generic boolean expression interface for the implementation of query/target object equivalence tests in molecular graph matching algorithms
CCDPL.Chem.BondConfigurationMatchExpression	BondConfigurationMatchExpression
CCDPL.Chem.BondDirectionMatchExpression	BondDirectionMatchExpression
►CCDPL.Chem.BondMatchExpressionList	A container for the storage and evaluation of logical match expression lists
CCDPL.Chem.ANDBondMatchExpressionList	ANDBondMatchExpressionList
CCDPL.Chem.ORBondMatchExpressionList	ORBondMatchExpressionList
CCDPL.Chem.BondReactionCenterStatusMatchExpression	BondReactionCenterStatusMatchExpression
CCDPL.Chem.BondSubstituentDirectionMatchExpression	BondSubstituentDirectionMatchExpression
CCDPL.Chem.NOTBondMatchExpression	NOTBondMatchExpression
CCDPL.Chem.BondMatchExpressionPtrBondFunctor
CCDPL.Chem.BondOrderCalculator	BondOrderCalculator
CCDPL.Chem.BondPredicate	A generic wrapper class used to store a user-defined bond predicate
CCDPL.Chem.BondProperty	Provides keys for built-in Chem.Bond properties
CCDPL.Chem.BondPropertyDefault	Provides default values for built-in Chem.Bond properties
CCDPL.Chem.BondPropertyFlag	Provides flags for the specification of basic Chem.Bond properties
CCDPL.Chem.BondStereoFlag	Provides constants for the specification of stereo bonds in 2D depictions of chemical structures
CCDPL.Chem.BondStereoFlagCalculator	BondStereoFlagCalculator
CCDPL.Chem.BoolAtom2Functor
CCDPL.Chem.BoolAtom4Functor
CCDPL.Chem.BoolAtomMappingFunctor
CCDPL.Chem.BoolBond2Functor
CCDPL.Chem.BoolConstMolecularGraphFunctor
CCDPL.Chem.BoolEntity3D2Functor
CCDPL.Chem.BoolEntity3D4Functor
CCDPL.Chem.BoolEntity3DMappingFunctor
CCDPL.Chem.BoolMolecularGraphAtomBondMappingFunctor
CCDPL.Chem.BoolMolecularGraphFunctor
CCDPL.Chem.BoolSTPairArrayFunctor
CCDPL.Chem.BRICSAtomLabel	Provides constants for the labeling of atoms in bonds matched by a BRICS fragmentation rule
CCDPL.Chem.BRICSRuleID	Provides constants for the identification of BRICS fragmentation rules
CCDPL.Chem.CanonicalNumberingCalculator	CanonicalNumberingCalculator
CCDPL.Chem.ChEMBLStandardizer	Implementation of the ChEMBL structure preprocessing pipeline
CCDPL.Chem.CIPConfigurationLabeler	CIPConfigurationLabeler
CCDPL.Chem.CIPDescriptor	Provides constants for the specification of stereogenic atom/bond configurations determined by the CIP sequence rules
CCDPL.Chem.CIPPriorityCalculator	CIPPriorityCalculator
CCDPL.Chem.CommonConnectedSubstructureSearch	CommonConnectedSubstructureSearch
CCDPL.Chem.ControlParameter	Provides keys for built-in control-parameters
CCDPL.Chem.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.Chem.DataFormat	Provides preinitialized Base.DataFormat objects for all supported chemical data formats
CCDPL.Chem.DoubleAtom2Functor
CCDPL.Chem.DoubleAtom2UInt2Functor
CCDPL.Chem.DoubleAtom2UIntFunctor
CCDPL.Chem.DoubleAtomFunctor
CCDPL.Chem.DoubleDVectorFunctor
CCDPL.Chem.DoubleEntity3D2Functor
CCDPL.Chem.DoubleEntity3DFunctor
CCDPL.Chem.DoubleVector3D2AtomFunctor
►CCDPL.Chem.ElectronSystemList	A data type for the storage of Chem.ElectronSystem objects
CCDPL.Chem.PiElectronSystemList	Implements the perception of all pi electron systems present in a molecule
►CCDPL.Chem.Entity3DContainer	A common interface for data-structures that support a random access to stored Chem.Entity3D instances
►CCDPL.Chem.AtomContainer	A common interface for data-structures that support a random access to stored Chem.Atom instances
CCDPL.Chem.Atom	Atom
CCDPL.Chem.Bond	Bond
CCDPL.Chem.ElectronSystem	Describes an electron system of a molecule in terms of involved atoms and their electron contributions
CCDPL.Chem.MolecularGraph	MolecularGraph
CCDPL.Pharm.FeatureContainer	FeatureContainer
CCDPL.Chem.Entity3DMapping	A data type for the storage and lookup of arbitrary entity to entity mappings
CCDPL.Chem.Entity3DProperty	Provides keys for built-in Chem.Entity3D properties
CCDPL.Chem.Fragment.AtomSequence
CCDPL.Chem.Fragment.BondSequence
►CCDPL.Chem.FragmentGenerator	FragmentGenerator
CCDPL.Chem.BRICSFragmentGenerator	BRICSFragmentGenerator
CCDPL.Chem.RECAPFragmentGenerator	RECAPFragmentGenerator
CCDPL.Chem.FragmentGenerator.ExcludePattern
CCDPL.Chem.FragmentGenerator.FragmentationRule
CCDPL.Chem.FragmentGenerator.FragmentLink
►CCDPL.Chem.FragmentList	A data type for the storage of Chem.Fragment objects
CCDPL.Biomol.ResidueList	Implements the extraction of residues in biological macromolecules
CCDPL.Chem.AromaticRingSet	Implements the perception of aromatic rings in a molecular graph
CCDPL.Chem.AromaticSSSRSubset	Implements the extraction of the aromatic rings in the SSSR of a molecular graph
CCDPL.Chem.CompleteRingSet	Implements the exhaustive perception of rings in a molecular graph
CCDPL.Chem.ComponentSet	Implements the perception of molecular graph components
CCDPL.Chem.ConnectedSubstructureSet	ConnectedSubstructureSet
CCDPL.Chem.SmallestSetOfSmallestRings	Implements the perception of the Smallest Set of Smallest Rings (SSSR) of a molecular graphs
CCDPL.ForceField.MMFF94AromaticSSSRSubset	Implements the extraction of all rings in the SSSR of a molecular graph that are aromatic according to MMFF94 conventions
CCDPL.Chem.HashCodeCalculator	HashCodeCalculator
CCDPL.Chem.HashCodeCalculator.DefAtomHashSeedFunctor	The default functor for the generation of atom hash seeds
CCDPL.Chem.HashCodeCalculator.DefBondHashSeedFunctor	The default functor for the generation of bond hash seeds
CCDPL.Chem.HybridizationState	Provides constants for the specification of atom hybridization states
CCDPL.Chem.Hydrogen3DCoordinatesCalculator	Hydrogen3DCoordinatesCalculator
CCDPL.Chem.INCHIReturnCode	Provides constants that are used to describe the status of an InChI [INCHI] output or input operation
CCDPL.Chem.KekuleStructureCalculator	KekuleStructureCalculator
CCDPL.Chem.MatchConstraint	MatchConstraint
CCDPL.Chem.MatchConstraintList	MatchConstraintList
CCDPL.Chem.MaxCommonAtomSubstructureSearch	MaxCommonAtomSubstructureSearch
CCDPL.Chem.MaxCommonBondSubstructureSearch	MaxCommonBondSubstructureSearch
CCDPL.Chem.MDLDataFormatVersion	Provides constants that are used to specify the connection table and Rxn-File version for the I/O of molecular graphs and reactions in MDL format [CTFILE]
CCDPL.Chem.MDLParity	Provides constants that are used to specify the MDL stereo parity of atoms
CCDPL.Chem.MOL2ChargeType	Provides constants for the specification of the atom charge type in Tripos MOL2 files
CCDPL.Chem.MOL2MoleculeType	Provides constants for the specification of the molecule type in Tripos MOL2 files
CCDPL.Chem.MolecularGraph.AtomSequence
CCDPL.Chem.MolecularGraph.BondSequence
CCDPL.Chem.MolecularGraphInputHandler
CCDPL.Chem.MolecularGraphIOManager	A singleton class that serves as a global registry for Chem.MolecularGraphInputHandler and Chem.MolecularGraphOutputHandler implementation instances
CCDPL.Chem.MolecularGraphIOManager.InputHandlerSequence
CCDPL.Chem.MolecularGraphIOManager.OutputHandlerSequence
CCDPL.Chem.MolecularGraphMatchConstraint	Provides numerical identifiers for built-in Chem.MolecularGraph matching constraints
►CCDPL.Chem.MolecularGraphMatchExpression	A generic boolean expression interface for the implementation of query/target object equivalence tests in molecular graph matching algorithms
CCDPL.Chem.MolecularGraphComponentGroupingMatchExpression	MolecularGraphComponentGroupingMatchExpression
►CCDPL.Chem.MolecularGraphMatchExpressionList
CCDPL.Chem.ANDMolecularGraphMatchExpressionList	ANDMolecularGraphMatchExpressionList
CCDPL.Chem.ORMolecularGraphMatchExpressionList	ORMolecularGraphMatchExpressionList
CCDPL.Chem.NOTMolecularGraphMatchExpression	NOTMolecularGraphMatchExpression
►CCDPL.Chem.MolecularGraphOutputHandler	A factory interface providing methods for the creation of Chem.MolecularGraphWriterBase instances for data output in a particular storage format
CCDPL.Biomol.MMTFBZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the Macromolecular Transmission Format (MMTF) [MMTF]
CCDPL.Biomol.MMTFGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the Macromolecular Transmission Format (MMTF) [MMTF]
CCDPL.Biomol.MMTFMolecularGraphOutputHandler	A handler for the output of molecular graph data in the Macromolecular Transmission Format (MMTF) [MMTF] format
CCDPL.Biomol.PDBBZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Biomol.PDBGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Biomol.PDBMolecularGraphOutputHandler	A handler for the output of molecular graph data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Chem.CDFBZ2MolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the native I/O format of the CDPL
CCDPL.Chem.CDFGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the native I/O format of the CDPL
CCDPL.Chem.CDFMolecularGraphOutputHandler	A handler for the output of molecular graph data in the native I/O format of the CDPL
CCDPL.Chem.INCHIMolecularGraphOutputHandler	A handler for the output of molecular graph data in the IUPAC International Chemical Identifier (InChI) [INCHI] format
CCDPL.Chem.JMEMolecularGraphOutputHandler	A handler for the output of molecular graph data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.MOL2BZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the Sybyl MOL2 format
CCDPL.Chem.MOL2GZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the Sybyl MOL2 format
CCDPL.Chem.MOL2MolecularGraphOutputHandler	A handler for the output of molecular graph data in the Sybyl MOL2 format
CCDPL.Chem.MOLMolecularGraphOutputHandler	A handler for the output of molecular graph data in the MDL Mol-File [CTFILE] format
CCDPL.Chem.SDFBZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SDFGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SDFMolecularGraphOutputHandler	A handler for the output of molecular graph data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SMARTSMolecularGraphOutputHandler	A handler for the output of molecular graph data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESMolecularGraphOutputHandler	A handler for the output of molecular graph data in the Daylight SMILES [SMILES] format
CCDPL.Chem.XYZBZ2MolecularGraphOutputHandler	A handler for the output of bzip2-compressed molecular graph data in the XYZ format
CCDPL.Chem.XYZGZMolecularGraphOutputHandler	A handler for the output of gzip-compressed molecular graph data in the XYZ format
CCDPL.Chem.XYZMolecularGraphOutputHandler	A handler for the output of molecular graph data in the XYZ format
CCDPL.Pharm.PSDMolecularGraphOutputHandler	A handler for the output of molecular graph dara in the PSD-format of the CDPL
CCDPL.Vis.PDFMolecularGraphOutputHandler	A handler for the output of 2D depictions of chemical structures in the Portable Document Format (PDF) [WPDF]
CCDPL.Vis.PNGMolecularGraphOutputHandler	A handler for the output of 2D depictions of chemical structures in the Portable Network Graphics (PNG) [WPNG] format
CCDPL.Vis.PSMolecularGraphOutputHandler	A handler for the output of 2D depictions of chemical structures in the PostScript (PS) [WPS] format
CCDPL.Vis.SVGMolecularGraphOutputHandler	A handler for the output of 2D depictions of chemical structures in the Scalable Vector Graphics (SVG) [WSVG] format
CCDPL.Chem.MolecularGraphProperty	Provides keys for built-in Chem.MolecularGraph properties
CCDPL.Chem.MolecularGraphPropertyDefault	Provides default values for built-in Chem.MolecularGraph properties
CCDPL.Chem.Molecule.AtomSequence
CCDPL.Chem.Molecule.BondSequence
►CCDPL.Chem.MoleculeInputHandler	A factory interface providing methods for the creation of Chem.MoleculeReaderBase instances for reading data provided in a particular storage format
CCDPL.Biomol.MMTFBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the Macromolecular Transmission Format (MMTF) [MMTF] format
CCDPL.Biomol.MMTFGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the Macromolecular Transmission Format (MMTF) [MMTF] format
CCDPL.Biomol.MMTFMoleculeInputHandler	A handler for the input of molecule data in the Macromolecular Transmission Format (MMTF)y [MMTF]
CCDPL.Biomol.PDBBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Biomol.PDBGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Biomol.PDBMoleculeInputHandler	A handler for the input of molecule data in the Brookhaven Protein Data Bank (PDB) [PDB] format
CCDPL.Chem.CDFBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the native I/O format of the CDPL
CCDPL.Chem.CDFGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the native I/O format of the CDPL
CCDPL.Chem.CDFMoleculeInputHandler	A handler for the input of molecule data in the native I/O format of the CDPL
CCDPL.Chem.INCHIMoleculeInputHandler	A handler for the input of molecule data in the IUPAC International Chemical Identifier (InChI) [INCHI] format
CCDPL.Chem.JMEMoleculeInputHandler	A handler for the input of molecule data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.MOL2BZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the Sybyl MOL2 format
CCDPL.Chem.MOL2GZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the Sybyl MOL2 format
CCDPL.Chem.MOL2MoleculeInputHandler	A handler for the input of molecule data in the Sybyl MOL2 format
CCDPL.Chem.MOLMoleculeInputHandler	A handler for the input of molecule data in the MDL Mol-File [CTFILE] format
CCDPL.Chem.SDFBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SDFGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SDFMoleculeInputHandler	A handler for the input of molecule data in the MDL SD-File [CTFILE] format
CCDPL.Chem.SMARTSMoleculeInputHandler	A handler for the input of molecule data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESMoleculeInputHandler	A handler for the input of molecule data in the Daylight SMILES [SMILES] format
CCDPL.Chem.XYZBZ2MoleculeInputHandler	A handler for the input of bzip2-compressed molecule data in the XYZ format
CCDPL.Chem.XYZGZMoleculeInputHandler	A handler for the input of gzip-compressed molecule data in the XYZ format
CCDPL.Chem.XYZMoleculeInputHandler	A handler for the input of molecule data in the XYZ format
CCDPL.ConfGen.CFLMoleculeInputHandler	A handler for the input of molecule data from conformer generator fragment libraries
CCDPL.Pharm.PSDMoleculeInputHandler	A handler for the input of molecule data in the PSD-format of the CDPL
CCDPL.Chem.MoleculeIOManager	A singleton class that serves as a global registry for Chem.MoleculeInputHandler and Chem.MoleculeOutputHandler implementation instances
CCDPL.Chem.MoleculeIOManager.InputHandlerSequence
CCDPL.Chem.MoleculeIOManager.OutputHandlerSequence
CCDPL.Chem.MoleculeOutputHandler
CCDPL.Chem.MolGraphMatchExpressionPtrMolGraphFunctor
CCDPL.Chem.MorganNumberingCalculator	MorganNumberingCalculator
►CCDPL.Chem.MultiConfMoleculeInputProcessor	MultiConfMoleculeInputProcessor
CCDPL.Chem.DefaultMultiConfMoleculeInputProcessor	MultiConfMoleculeInputProcessor
CCDPL.Chem.PatternAtomTyper	PatternAtomTyper
CCDPL.Chem.PatternAtomTyper.Pattern
CCDPL.Chem.PatternBasedTautomerizationRule.BondOrderChange
CCDPL.Chem.ProtonationStateStandardizer	Sets the protation state of molecules according to desired objectives
CCDPL.Chem.RadicalType	Provides constants that are used to specify the degeneracy of the electronic state of radical atoms
CCDPL.Chem.Reaction.ComponentSequence
CCDPL.Chem.ReactionCenterStatus	Provides flags that are used to describe state changes of atoms and bonds in a reaction center
►CCDPL.Chem.ReactionInputHandler	A factory interface providing methods for the creation of Chem.ReactionReaderBase instances for reading data provided in a particular storage format
CCDPL.Chem.CDFBZ2ReactionInputHandler	A handler for the input of gzip-compressed reaction data in the native I/O format of the CDPL
CCDPL.Chem.CDFGZReactionInputHandler	A handler for the input of gzip-compressed reaction data in the native I/O format of the CDPL
CCDPL.Chem.CDFReactionInputHandler	A handler for the input of reaction data in the native I/O format of the CDPL
CCDPL.Chem.JMEReactionInputHandler	A handler for the input of reaction data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.RDFBZ2ReactionInputHandler	A handler for the input of bzip2-compressed reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RDFGZReactionInputHandler	A handler for the input of gzip-compressed reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RDFReactionInputHandler	A handler for the input of reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RXNReactionInputHandler	A handler for the input of reaction data in the MDL Rxn-File [CTFILE] format
CCDPL.Chem.SMARTSReactionInputHandler	A handler for the input of reaction data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2ReactionInputHandler	A handler for the input of bzip2-compressed reaction data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESGZReactionInputHandler	A handler for the input of gzip-compressed reaction data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESReactionInputHandler	A handler for the input of reaction data in the Daylight SMILES [SMILES] format
CCDPL.Chem.ReactionIOManager	A singleton class that serves as a global registry for Chem.ReactionInputHandler and Chem.ReactionOutputHandler implementation instances
CCDPL.Chem.ReactionIOManager.InputHandlerSequence
CCDPL.Chem.ReactionIOManager.OutputHandlerSequence
CCDPL.Chem.ReactionMatchConstraint	Provides numerical identifiers for built-in Chem.Reaction matching constraints
►CCDPL.Chem.ReactionMatchExpression	A generic boolean expression interface for the implementation of query/target object equivalence tests in molecular graph matching algorithms
CCDPL.Chem.NOTReactionMatchExpression	NOTReactionMatchExpression
CCDPL.Chem.ReactionAtomMappingMatchExpression	ReactionAtomMappingMatchExpression
CCDPL.Chem.ReactionComponentGroupingMatchExpression	ReactionComponentGroupingMatchExpression
►CCDPL.Chem.ReactionMatchExpressionList
CCDPL.Chem.ANDReactionMatchExpressionList	ANDReactionMatchExpressionList
CCDPL.Chem.ORReactionMatchExpressionList	ORReactionMatchExpressionList
►CCDPL.Chem.ReactionOutputHandler	A factory interface providing methods for the creation of Chem.ReactionWriterBase instances for data output in a particular storage format
CCDPL.Chem.CDFBZ2ReactionOutputHandler	A handler for the output of gzip-compressed reaction data in the native I/O format of the CDPL
CCDPL.Chem.CDFGZReactionOutputHandler	A handler for the output of gzip-compressed reaction data in the native I/O format of the CDPL
CCDPL.Chem.CDFReactionOutputHandler	A handler for the output of reaction data in the native I/O format of the CDPL
CCDPL.Chem.JMEReactionOutputHandler	A handler for the output of reaction data in the native I/O format of the JME Molecular Editor [JME] java applet
CCDPL.Chem.RDFBZ2ReactionOutputHandler	A handler for the output of bzip2-compressed reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RDFGZReactionOutputHandler	A handler for the output of gzip-compressed reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RDFReactionOutputHandler	A handler for the output of reaction data in the MDL RD-File [CTFILE] format
CCDPL.Chem.RXNReactionOutputHandler	A handler for the output of reaction data in the MDL Rxn-File [CTFILE] format
CCDPL.Chem.SMARTSReactionOutputHandler	A handler for the output of reaction data in the Daylight SMARTS [SMARTS] format
CCDPL.Chem.SMILESBZ2ReactionOutputHandler	A handler for the output of bzip2-compressed reaction data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESGZReactionOutputHandler	A handler for the output of gzip-compressed reaction data in the Daylight SMILES [SMILES] format
CCDPL.Chem.SMILESReactionOutputHandler	A handler for the output of reaction data in the Daylight SMILES [SMILES] format
CCDPL.Vis.PDFReactionOutputHandler	A handler for the output of 2D depictions of chemical reactions in the Portable Document Format (PDF) [WPDF]
CCDPL.Vis.PNGReactionOutputHandler	A handler for the output of 2D depictions of chemical reactions in the Portable Network Graphics (PNG) [WPNG] format
CCDPL.Vis.PSReactionOutputHandler	A handler for the output of 2D depictions of chemical reactions in the PostScript (PS) [WPS] format
CCDPL.Vis.SVGReactionOutputHandler	A handler for the output of 2D depictions of chemical reactions in the Scalable Vector Graphics (SVG) [WSVG] format
CCDPL.Chem.ReactionProperty	Provides keys for built-in Chem.Reaction properties
CCDPL.Chem.ReactionPropertyDefault	Provides default values for built-in Chem.Reaction properties
CCDPL.Chem.ReactionRole	Provides constants that are used to specify the role of molecules (components) in a chemical reaction
CCDPL.Chem.ReactionSubstructureSearch	ReactionSubstructureSearch
CCDPL.Chem.Reactor	Reactor
CCDPL.Chem.RECAPAtomLabel	Provides constants for the labeling of atoms in bonds matched by a RECAP fragmentation rule
CCDPL.Chem.RECAPRuleID	Provides constants for the identification of RECAP fragmentation rules
CCDPL.Chem.ResonanceStructureGenerator	ResonanceStructureGenerator
CCDPL.Chem.ResonanceStructureGenerator.StructureData
CCDPL.Chem.SizeTypeAtomFunctor
CCDPL.Chem.SizeTypeAtomMolecularGraphFunctor
CCDPL.Chem.SpatialAtomAlignment
CCDPL.Chem.SpatialEntity3DAlignment
CCDPL.Chem.StereoDescriptor	A data structure for the storage and retrieval of stereochemical information about atoms and bonds
CCDPL.Chem.StereoDescriptor.ReferenceAtomArray
CCDPL.Chem.StereoisomerGenerator	StereoisomerGenerator
CCDPL.Chem.StereoisomerGenerator.StereoDescriptorArray
CCDPL.Chem.StringDataBlock	An array of Chem.StringDataBlockEntry objects used to store the structure or reaction data block of a STRING SD- or RD-File data record (see [CTFILE])
CCDPL.Chem.StringDataBlockEntry	Represents a data item in the structure or reaction data block of a MDL SD- or RD-File data record (see [CTFILE])
CCDPL.Chem.SubstructureHistogramCalculator	SubstructureHistogramCalculator
CCDPL.Chem.SubstructureHistogramCalculator.Pattern
CCDPL.Chem.SubstructureSearch	SubstructureSearch
CCDPL.Chem.SurfaceAtomExtractor	SurfaceAtomExtractor
CCDPL.Chem.SybylAtomType	Provides constants for the specification of the Tripos Sybyl atom type
CCDPL.Chem.SybylBondType	Provides constants for the specification of the Tripos Sybyl bond type
CCDPL.Chem.SymmetryClassCalculator	SymmetryClassCalculator
►CCDPL.Chem.TautomerGenerator	TautomerGenerator
CCDPL.Chem.DefaultTautomerGenerator	DefaultTautomerGenerator
►CCDPL.Chem.TautomerizationRule	TautomerizationRule
►CCDPL.Chem.PatternBasedTautomerizationRule	PatternBasedTautomerizationRule
CCDPL.Chem.AmideImidicAcidTautomerization	AmideImidicAcidTautomerizationRule
CCDPL.Chem.GenericHydrogen13ShiftTautomerization	GenericHydrogen13ShiftTautomerizationRule
CCDPL.Chem.GenericHydrogen15ShiftTautomerization	GenericHydrogen15ShiftTautomerizationRule
CCDPL.Chem.ImineEnamineTautomerization	ImineEnamineTautomerizationRule
CCDPL.Chem.KeteneYnolTautomerization	KeteneYnolTautomerizationRule
CCDPL.Chem.KetoEnolTautomerization	KetoEnolTautomerizationRule
CCDPL.Chem.LactamLactimTautomerization	LactamLactimTautomerizationRule
CCDPL.Chem.NitroAciTautomerization	NitroAciTautomerizationRule
CCDPL.Chem.NitrosoOximeTautomerization	NitrosoOximeTautomerizationRule
CCDPL.Chem.PhosphinicAcidTautomerization	PhosphinicAcidTautomerizationRule
CCDPL.Chem.SulfenicAcidTautomerization	SulfenicAcidTautomerizationRule
CCDPL.Chem.TautomerizationType	Provides constants serving as identifiers for built-in Chem.TautomerizationRule implementations
CCDPL.Chem.TautomerScore	TautomerScore
CCDPL.Chem.TopologicalAtomAlignment
CCDPL.Chem.TopologicalEntity3DAlignment
CCDPL.Chem.UInt64AtomFunctor
CCDPL.Chem.UInt64AtomMolecularGraphFunctor
CCDPL.Chem.UInt64BondFunctor
CCDPL.Chem.Vector2DAtomFunctor
CCDPL.Chem.Vector3DEntity3DFunctor
CCDPL.Chem.VoidMolecularGraphFunctor
CCDPL.Chem.VoidMoleculeMolecularGraphFunctor
CCDPL.ConfGen.CallbackFunction	A generic wrapper class used to store a user-defined callback functions (see [FUNWRP])
CCDPL.ConfGen.CanonicalFragment.AtomMapping
CCDPL.ConfGen.ConformerGenerator
CCDPL.ConfGen.ConformerGeneratorSettings
CCDPL.ConfGen.ConformerSamplingMode	Provides constants used to specify the employed conformer sampling method
CCDPL.ConfGen.ControlParameter	Provides keys for built-in control-parameters
CCDPL.ConfGen.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.ConfGen.DataFormat	Provides preinitialized Base.DataFormat objects for all supported data formats
CCDPL.ConfGen.DGConstraintGenerator
CCDPL.ConfGen.DGConstraintGenerator.StereoCenterData
►CCDPL.ConfGen.DGConstraintGeneratorSettings
CCDPL.ConfGen.DGStructureGeneratorSettings
CCDPL.ConfGen.DGStructureGenerator
CCDPL.ConfGen.ForceFieldType	Provides constants that are used to specify the forcefield that shall be used for 3D coordinates refinement and energy calculations
CCDPL.ConfGen.FragmentAssembler
CCDPL.ConfGen.FragmentAssemblerSettings
CCDPL.ConfGen.FragmentConformerGenerator
CCDPL.ConfGen.FragmentConformerGeneratorSettings
CCDPL.ConfGen.FragmentConformerGeneratorSettings.FragmentSettings
CCDPL.ConfGen.FragmentLibrary
CCDPL.ConfGen.FragmentLibraryEntry	FragmentLibraryEntry
CCDPL.ConfGen.FragmentLibraryGenerator	FragmentLibraryGenerator
CCDPL.ConfGen.FragmentType	Provides constants that are used to describe the nature of fragments used to build-up molecule 3D models
CCDPL.ConfGen.LogMessageCallbackFunction	A generic wrapper class used to store a user-defined callback functions
CCDPL.ConfGen.NitrogenEnumerationMode	Provides constants that are used to specify the mode of invertible nitrogen enumeration
CCDPL.ConfGen.ReturnCode	Provides constants that are used to describe the result of operations related to conformer generation
CCDPL.ConfGen.RMSDConformerSelector
CCDPL.ConfGen.StructureGenerationMode	Provides constants used to specify the employed structure generation method
CCDPL.ConfGen.StructureGenerator
CCDPL.ConfGen.StructureGeneratorSettings
►CCDPL.ConfGen.TorsionCategory
CCDPL.ConfGen.TorsionLibrary
CCDPL.ConfGen.TorsionCategory.CategorySequence
CCDPL.ConfGen.TorsionCategory.RuleSequence
CCDPL.ConfGen.TorsionDriver
CCDPL.ConfGen.TorsionDriverSettings
CCDPL.ConfGen.TorsionRule
CCDPL.ConfGen.TorsionRule.AngleEntry
CCDPL.ConfGen.TorsionRuleMatch
CCDPL.ConfGen.TorsionRuleMatch.AtomArray
CCDPL.ConfGen.TorsionRuleMatcher
CCDPL.Descr.AtomAutoCorrelation3DVectorCalculator	AtomAutoCorrelation3DVectorCalculator
CCDPL.Descr.AtomRDFCodeCalculator	AtomRDFCodeCalculator
CCDPL.Descr.AutoCorrelation2DVectorCalculator	AutoCorrelation2DVectorCalculator
CCDPL.Descr.BCUTDescriptorCalculator	BCUTDescriptorCalculator
CCDPL.Descr.BurdenMatrixGenerator	BurdenMatrixGenerator
CCDPL.Descr.CircularFingerprintGenerator	CircularFingerprintGenerator
CCDPL.Descr.CircularFingerprintGenerator.DefAtomIdentifierFunctor	The functor for the generation of ECFP atom identifiers
CCDPL.Descr.CircularFingerprintGenerator.DefBondIdentifierFunctor	The default functor for the generation of bond identifiers
CCDPL.Descr.FeatureAutoCorrelation3DVectorCalculator	FeatureAutoCorrelation3DVectorCalculator
CCDPL.Descr.FeatureRDFCodeCalculator	FeatureRDFCodeCalculator
CCDPL.Descr.MolecularComplexityCalculator	MolecularComplexityCalculator
CCDPL.Descr.MoleculeAutoCorr2DDescriptorCalculator	MoleculeAutoCorr2DDescriptorCalculator
CCDPL.Descr.MoleculeAutoCorr3DDescriptorCalculator	MoleculeAutoCorr3DDescriptorCalculator
CCDPL.Descr.MoleculeRDFDescriptorCalculator	MoleculeRDFDescriptorCalculator
CCDPL.Descr.PathFingerprintGenerator	PathFingerprintGenerator
CCDPL.Descr.PathFingerprintGenerator.DefAtomDescriptorFunctor	The default functor for the generation of atom descriptors
CCDPL.Descr.PathFingerprintGenerator.DefBondDescriptorFunctor	The default functor for the generation of bond descriptors
CCDPL.Descr.PharmacophoreAutoCorr3DDescriptorCalculator	PharmacophoreAutoCorr3DDescriptorCalculator
CCDPL.Descr.PharmacophoreRDFDescriptorCalculator	PharmacophoreRDFDescriptorCalculator
CCDPL.ForceField.AtomProperty	Provides keys for built-in Chem.Atom properties
CCDPL.ForceField.BondProperty	Provides keys for built-in Chem.Bond properties
CCDPL.ForceField.ElasticPotential
CCDPL.ForceField.ElasticPotentialList
CCDPL.ForceField.InteractionFilterFunction2
CCDPL.ForceField.InteractionFilterFunction3
CCDPL.ForceField.InteractionFilterFunction4
CCDPL.ForceField.InteractionType	Provides flags for the specification of a set of force field interaction types
CCDPL.ForceField.MMFF94AngleBendingInteraction
CCDPL.ForceField.MMFF94AngleBendingInteractionList
CCDPL.ForceField.MMFF94AngleBendingInteractionParameterizer
CCDPL.ForceField.MMFF94AngleBendingParameterTable
CCDPL.ForceField.MMFF94AngleBendingParameterTable.Entry
CCDPL.ForceField.MMFF94AromaticAtomTypeDefinitionTable
CCDPL.ForceField.MMFF94AromaticAtomTypeDefinitionTable.Entry
CCDPL.ForceField.MMFF94AtomChargeFunction	A generic wrapper class used to store a user-defined MMFF94 partial atom charge function
CCDPL.ForceField.MMFF94AtomTypePropertyTable
CCDPL.ForceField.MMFF94AtomTypePropertyTable.Entry
CCDPL.ForceField.MMFF94AtomTyper
CCDPL.ForceField.MMFF94BondChargeIncrementTable
CCDPL.ForceField.MMFF94BondChargeIncrementTable.Entry
CCDPL.ForceField.MMFF94BondStretchingInteraction
CCDPL.ForceField.MMFF94BondStretchingInteractionList
CCDPL.ForceField.MMFF94BondStretchingInteractionParameterizer
CCDPL.ForceField.MMFF94BondStretchingParameterTable
CCDPL.ForceField.MMFF94BondStretchingParameterTable.Entry
CCDPL.ForceField.MMFF94BondStretchingRuleParameterTable
CCDPL.ForceField.MMFF94BondStretchingRuleParameterTable.Entry
CCDPL.ForceField.MMFF94BondTypeIndexFunction	A generic wrapper class used to store a user-defined MMFF94 bond type index function
CCDPL.ForceField.MMFF94BondTyper
CCDPL.ForceField.MMFF94ChargeCalculator
CCDPL.ForceField.MMFF94DefaultStretchBendParameterTable
CCDPL.ForceField.MMFF94DefaultStretchBendParameterTable.Entry
CCDPL.ForceField.MMFF94ElectrostaticInteraction
CCDPL.ForceField.MMFF94ElectrostaticInteractionList
CCDPL.ForceField.MMFF94ElectrostaticInteractionParameterizer
CCDPL.ForceField.MMFF94EnergyCalculator
CCDPL.ForceField.MMFF94FormalAtomChargeDefinitionTable
CCDPL.ForceField.MMFF94FormalAtomChargeDefinitionTable.Entry
CCDPL.ForceField.MMFF94GradientCalculator
CCDPL.ForceField.MMFF94HeavyToHydrogenAtomTypeMap
CCDPL.ForceField.MMFF94HeavyToHydrogenAtomTypeMap.Entry
CCDPL.ForceField.MMFF94InteractionData
CCDPL.ForceField.MMFF94InteractionParameterizer
CCDPL.ForceField.MMFF94NumericAtomTypeFunction	A generic wrapper class used to store a user-defined numeric MMFF94 atom type function
CCDPL.ForceField.MMFF94OutOfPlaneBendingInteraction
CCDPL.ForceField.MMFF94OutOfPlaneBendingInteractionList
CCDPL.ForceField.MMFF94OutOfPlaneBendingInteractionParameterizer
CCDPL.ForceField.MMFF94OutOfPlaneBendingParameterTable
CCDPL.ForceField.MMFF94OutOfPlaneBendingParameterTable.Entry
CCDPL.ForceField.MMFF94ParameterSet	Provides flags for the specification of the MMFF94 parameter set to use
CCDPL.ForceField.MMFF94PartialBondChargeIncrementTable
CCDPL.ForceField.MMFF94PartialBondChargeIncrementTable.Entry
CCDPL.ForceField.MMFF94PrimaryToParameterAtomTypeMap
CCDPL.ForceField.MMFF94PrimaryToParameterAtomTypeMap.Entry
CCDPL.ForceField.MMFF94RingSetFunction	A generic wrapper class used to store a user-defined MMFF94 ring set function
CCDPL.ForceField.MMFF94StretchBendInteraction
CCDPL.ForceField.MMFF94StretchBendInteractionList
CCDPL.ForceField.MMFF94StretchBendInteractionParameterizer
CCDPL.ForceField.MMFF94StretchBendParameterTable
CCDPL.ForceField.MMFF94StretchBendParameterTable.Entry
CCDPL.ForceField.MMFF94SymbolicAtomTypeFunction	A generic wrapper class used to store a user-defined symbolic MMFF94 atom type function
CCDPL.ForceField.MMFF94SymbolicAtomTypePatternTable
CCDPL.ForceField.MMFF94SymbolicAtomTypePatternTable.Entry
CCDPL.ForceField.MMFF94SymbolicToNumericAtomTypeMap
CCDPL.ForceField.MMFF94SymbolicToNumericAtomTypeMap.Entry
CCDPL.ForceField.MMFF94TorsionInteraction
CCDPL.ForceField.MMFF94TorsionInteractionList
CCDPL.ForceField.MMFF94TorsionInteractionParameterizer
CCDPL.ForceField.MMFF94TorsionParameterTable
CCDPL.ForceField.MMFF94TorsionParameterTable.Entry
CCDPL.ForceField.MMFF94VanDerWaalsAtomParameters
CCDPL.ForceField.MMFF94VanDerWaalsInteraction
CCDPL.ForceField.MMFF94VanDerWaalsInteractionList
CCDPL.ForceField.MMFF94VanDerWaalsInteractionParameterizer
CCDPL.ForceField.MMFF94VanDerWaalsParameterTable
CCDPL.ForceField.MMFF94VanDerWaalsParameterTable.Entry
CCDPL.ForceField.MolecularGraphProperty	Provides keys for built-in Chem.MolecularGraph properties
CCDPL.ForceField.TopologicalAtomDistanceFunction	A generic wrapper class used to store a user-defined topological atom-pair distance function
CCDPL.ForceField.UFFAtomType	Provides constants for the specification of Universal Force Field (UFF) atom types
CCDPL.ForceField.UFFAtomTypePropertyTable
CCDPL.ForceField.UFFAtomTypePropertyTable.Entry
CCDPL.GRAIL.AtomDensityGridCalculator	AtomDensityGridCalculator
CCDPL.GRAIL.AttributedGridProperty	Provides keys for built-in Grid.AttributedGrid properties
CCDPL.GRAIL.AttributedGridPropertyDefault	Provides default values for built-in Grid.AttributedGrid properties
CCDPL.GRAIL.BindingAffinityCalculator	BindingAffinityCalculator
CCDPL.GRAIL.BuriednessGridCalculator	BuriednessGridCalculator
CCDPL.GRAIL.BuriednessScore	BuriednessScore
CCDPL.GRAIL.DoubleVector3DFeatureFunctor
CCDPL.GRAIL.FeatureInteractionScoreGridCalculator	FeatureInteractionScoreGridCalculator
CCDPL.GRAIL.FeatureInteractionScoreGridCalculator.MaxScoreFunctor
CCDPL.GRAIL.FeatureInteractionScoreGridCalculator.ScoreSumFunctor
CCDPL.GRAIL.FeatureType	Provides constants for the specification of pharmacophore feature types with extensions for H-bond acceptors and donors
CCDPL.GRAIL.GeneralizedBellAtomDensity	GeneralizedBellAtomDensity
CCDPL.GRAIL.GRAILDataSetGenerator	GRAILDataSetGenerator
CCDPL.GRAIL.GRAILDescriptorCalculator	GRAILDescriptorCalculator
CCDPL.GRAIL.GRAILXDescriptorCalculator	GRAILXDescriptorCalculator
CCDPL.GRAIL.VoidPharmacophoreFunctor
CCDPL.Grid.AttributedGridProperty	Provides keys for built-in Grid.AttributedGrid properties
CCDPL.Grid.AttributedGridPropertyDefault	Provides default values for built-in Grid.AttributedGrid properties
CCDPL.Grid.ControlParameter	Provides keys for built-in control-parameters
CCDPL.Grid.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.Grid.DataFormat	Provides preinitialized Base.DataFormat objects for all supported data formats
►CCDPL.Grid.DRegularGridInputHandler	A factory interface providing methods for the creation of Grid.DRegularGridReaderBase instances for reading data provided in a particular storage format
CCDPL.Grid.CDFBZ2DRegularGridInputHandler	A handler for the input of bzip2-compressed spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFDRegularGridInputHandler	A handler for the input of spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridInputHandler	A handler for the input of gzip-compressed spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.DRegularGridIOManager	A singleton class that serves as a global registry for Grid.DRegularGridInputHandler and Grid.DRegularGridOutputHandler implementation instances
CCDPL.Grid.DRegularGridIOManager.InputHandlerSequence
CCDPL.Grid.DRegularGridIOManager.OutputHandlerSequence
►CCDPL.Grid.DRegularGridOutputHandler	A factory interface providing methods for the creation of Grid.DRegularGridWriterBase instances for data output in a particular storage format
CCDPL.Grid.CDFBZ2DRegularGridOutputHandler	A handler for the output of bzip2-compressed spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFDRegularGridOutputHandler	A handler for the output of spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridOutputHandler	A handler for the output of gzip-compressed spatial regular grid data in the native I/O format of the CDPL
CCDPL.Grid.DRegularGridSet	RegularGridSet
►CCDPL.Grid.DRegularGridSetInputHandler	A factory interface providing methods for the creation of Grid.DRegularGridSetReaderBase instances for reading data provided in a particular storage format
CCDPL.Grid.CDFBZ2DRegularGridSetInputHandler	A handler for the input of bzip2-compressed spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFDRegularGridSetInputHandler	A handler for the input of spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridSetInputHandler	A handler for the input of gzip-compressed spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.DRegularGridSetIOManager	A singleton class that serves as a global registry for Grid.DRegularGridSetInputHandler and Grid.DRegularGridSetOutputHandler implementation instances
CCDPL.Grid.DRegularGridSetIOManager.InputHandlerSequence
CCDPL.Grid.DRegularGridSetIOManager.OutputHandlerSequence
►CCDPL.Grid.DRegularGridSetOutputHandler	A factory interface providing methods for the creation of Grid.DRegularGridSetWriterBase instances for data output in a particular storage format
CCDPL.Grid.CDFBZ2DRegularGridSetOutputHandler	A handler for the output of bzip2-compressed spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFDRegularGridSetOutputHandler	A handler for the output of spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.CDFGZDRegularGridSetOutputHandler	A handler for the output of gzip-compressed spatial regular grid set data in the native I/O format of the CDPL
CCDPL.Grid.FRegularGridSet	RegularGridSet
►CCDPL.Math.ConstDGridExpression
CCDPL.Math.DGridExpression
CCDPL.Math.ConstDHomogenousCoordsAdapter
CCDPL.Math.ConstDMatrixColumn
►CCDPL.Math.ConstDMatrixExpression
CCDPL.Math.DMatrixExpression
CCDPL.Math.ConstDMatrixRange
CCDPL.Math.ConstDMatrixRow
CCDPL.Math.ConstDMatrixSlice
CCDPL.Math.ConstDMatrixTranspose
►CCDPL.Math.ConstDQuaternionExpression
CCDPL.Math.DQuaternionExpression
CCDPL.Math.ConstDQuaternionVectorAdapter
►CCDPL.Math.ConstDVectorExpression
CCDPL.Math.DVectorExpression
CCDPL.Math.ConstDVectorQuaternionAdapter
CCDPL.Math.ConstDVectorRange
CCDPL.Math.ConstDVectorSlice
►CCDPL.Math.ConstFGridExpression
CCDPL.Math.FGridExpression
CCDPL.Math.ConstFHomogenousCoordsAdapter
CCDPL.Math.ConstFMatrixColumn
►CCDPL.Math.ConstFMatrixExpression
CCDPL.Math.FMatrixExpression
CCDPL.Math.ConstFMatrixRange
CCDPL.Math.ConstFMatrixRow
CCDPL.Math.ConstFMatrixSlice
CCDPL.Math.ConstFMatrixTranspose
►CCDPL.Math.ConstFQuaternionExpression
CCDPL.Math.FQuaternionExpression
CCDPL.Math.ConstFQuaternionVectorAdapter
►CCDPL.Math.ConstFVectorExpression
CCDPL.Math.FVectorExpression
CCDPL.Math.ConstFVectorQuaternionAdapter
CCDPL.Math.ConstFVectorRange
CCDPL.Math.ConstFVectorSlice
CCDPL.Math.ConstLHomogenousCoordsAdapter
CCDPL.Math.ConstLMatrixColumn
►CCDPL.Math.ConstLMatrixExpression
CCDPL.Math.LMatrixExpression
CCDPL.Math.ConstLMatrixRange
CCDPL.Math.ConstLMatrixRow
CCDPL.Math.ConstLMatrixSlice
CCDPL.Math.ConstLMatrixTranspose
CCDPL.Math.ConstLowerTriangularDMatrixAdapter
CCDPL.Math.ConstLowerTriangularFMatrixAdapter
CCDPL.Math.ConstLowerTriangularLMatrixAdapter
CCDPL.Math.ConstLowerTriangularULMatrixAdapter
►CCDPL.Math.ConstLQuaternionExpression
CCDPL.Math.LQuaternionExpression
CCDPL.Math.ConstLQuaternionVectorAdapter
►CCDPL.Math.ConstLVectorExpression
CCDPL.Math.LVectorExpression
CCDPL.Math.ConstLVectorQuaternionAdapter
CCDPL.Math.ConstLVectorRange
CCDPL.Math.ConstLVectorSlice
CCDPL.Math.ConstULHomogenousCoordsAdapter
CCDPL.Math.ConstULMatrixColumn
►CCDPL.Math.ConstULMatrixExpression
CCDPL.Math.ULMatrixExpression
CCDPL.Math.ConstULMatrixRange
CCDPL.Math.ConstULMatrixRow
CCDPL.Math.ConstULMatrixSlice
CCDPL.Math.ConstULMatrixTranspose
►CCDPL.Math.ConstULQuaternionExpression
CCDPL.Math.ULQuaternionExpression
CCDPL.Math.ConstULQuaternionVectorAdapter
►CCDPL.Math.ConstULVectorExpression
CCDPL.Math.ULVectorExpression
CCDPL.Math.ConstULVectorQuaternionAdapter
CCDPL.Math.ConstULVectorRange
CCDPL.Math.ConstULVectorSlice
CCDPL.Math.ConstUnitLowerTriangularDMatrixAdapter
CCDPL.Math.ConstUnitLowerTriangularFMatrixAdapter
CCDPL.Math.ConstUnitLowerTriangularLMatrixAdapter
CCDPL.Math.ConstUnitLowerTriangularULMatrixAdapter
CCDPL.Math.ConstUnitUpperTriangularDMatrixAdapter
CCDPL.Math.ConstUnitUpperTriangularFMatrixAdapter
CCDPL.Math.ConstUnitUpperTriangularLMatrixAdapter
CCDPL.Math.ConstUnitUpperTriangularULMatrixAdapter
CCDPL.Math.ConstUpperTriangularDMatrixAdapter
CCDPL.Math.ConstUpperTriangularFMatrixAdapter
CCDPL.Math.ConstUpperTriangularLMatrixAdapter
CCDPL.Math.ConstUpperTriangularULMatrixAdapter
CCDPL.Math.DGrid	An unbounded dense grid holding floating point values of type double
CCDPL.Math.DHomogenousCoordsAdapter
CCDPL.Math.DIdentityMatrix
CCDPL.Math.DKabschAlgorithm
CCDPL.Math.DMatrix	An unbounded dense matrix holding floating point values of type double
CCDPL.Math.DMatrixColumn
CCDPL.Math.DMatrixRange
CCDPL.Math.DMatrixRow
CCDPL.Math.DMatrixSlice
CCDPL.Math.DMatrixTranspose
CCDPL.Math.DMLRModel	Performs Multiple Linear Regression [WLIREG] on a set of data points \( (y_i, \vec{X}_i) \)
CCDPL.Math.DoubleDVector2Functor
CCDPL.Math.DoubleDVectorFunctor
CCDPL.Math.DoubleVector2DArray2Functor
CCDPL.Math.DoubleVector2DArrayFunctor
CCDPL.Math.DoubleVector3DArray2Functor
CCDPL.Math.DoubleVector3DArrayFunctor
CCDPL.Math.DQuaternion
CCDPL.Math.DQuaternionVectorAdapter
CCDPL.Math.DRealQuaternion
►CCDPL.Math.DRegularSpatialGrid	An unbounded dense regular grid in 3D space holding floating point values of type double
CCDPL.Grid.DRegularGrid	RegularGrid
CCDPL.Math.DRotationMatrix
CCDPL.Math.DScalarGrid
CCDPL.Math.DScalarMatrix
CCDPL.Math.DScalarVector
CCDPL.Math.DScalingMatrix
CCDPL.Math.DTranslationMatrix
CCDPL.Math.DUnitVector
CCDPL.Math.DVector	An unbounded dense vector holding floating point values of type double
CCDPL.Math.DVectorBFGSMinimizer	Fletcher's implementation of the BFGS method
CCDPL.Math.DVectorQuaternionAdapter
CCDPL.Math.DVectorRange
CCDPL.Math.DVectorSlice
CCDPL.Math.DZeroGrid
CCDPL.Math.DZeroMatrix
CCDPL.Math.DZeroVector
CCDPL.Math.FGrid	An unbounded dense grid holding floating point values of type float
CCDPL.Math.FHomogenousCoordsAdapter
CCDPL.Math.FIdentityMatrix
CCDPL.Math.FKabschAlgorithm
CCDPL.Math.FloatFVector2Functor
CCDPL.Math.FloatFVectorFunctor
CCDPL.Math.FloatVector2FArray2Functor
CCDPL.Math.FloatVector2FArrayFunctor
CCDPL.Math.FloatVector3FArray2Functor
CCDPL.Math.FloatVector3FArrayFunctor
CCDPL.Math.FMatrix	An unbounded dense matrix holding floating point values of type float
CCDPL.Math.FMatrixColumn
CCDPL.Math.FMatrixRange
CCDPL.Math.FMatrixRow
CCDPL.Math.FMatrixSlice
CCDPL.Math.FMatrixTranspose
CCDPL.Math.FMLRModel	Performs Multiple Linear Regression [WLIREG] on a set of data points \( (y_i, \vec{X}_i) \)
CCDPL.Math.FQuaternion
CCDPL.Math.FQuaternionVectorAdapter
CCDPL.Math.FRealQuaternion
►CCDPL.Math.FRegularSpatialGrid	An unbounded dense regular grid in 3D space holding floating point values of type float
CCDPL.Grid.FRegularGrid	RegularGrid
CCDPL.Math.FRotationMatrix
CCDPL.Math.FScalarGrid
CCDPL.Math.FScalarMatrix
CCDPL.Math.FScalarVector
CCDPL.Math.FScalingMatrix
CCDPL.Math.FTranslationMatrix
CCDPL.Math.FUnitVector
CCDPL.Math.FVector	An unbounded dense vector holding floating point values of type float
CCDPL.Math.FVectorBFGSMinimizer	Fletcher's implementation of the BFGS method
CCDPL.Math.FVectorQuaternionAdapter
CCDPL.Math.FVectorRange
CCDPL.Math.FVectorSlice
CCDPL.Math.FZeroGrid
CCDPL.Math.FZeroMatrix
CCDPL.Math.FZeroVector
CCDPL.Math.LHomogenousCoordsAdapter
CCDPL.Math.LIdentityMatrix
CCDPL.Math.LMatrix	An unbounded dense matrix holding signed integers of type long
CCDPL.Math.LMatrixColumn
CCDPL.Math.LMatrixRange
CCDPL.Math.LMatrixRow
CCDPL.Math.LMatrixSlice
CCDPL.Math.LMatrixTranspose
CCDPL.Math.Lower
CCDPL.Math.LQuaternion
CCDPL.Math.LQuaternionVectorAdapter
CCDPL.Math.LRealQuaternion
CCDPL.Math.LRotationMatrix
CCDPL.Math.LScalarMatrix
CCDPL.Math.LScalarVector
CCDPL.Math.LScalingMatrix
CCDPL.Math.LTranslationMatrix
CCDPL.Math.LUnitVector
CCDPL.Math.LVector	An unbounded dense vector holding signed integers of type long
CCDPL.Math.LVectorQuaternionAdapter
CCDPL.Math.LVectorRange
CCDPL.Math.LVectorSlice
CCDPL.Math.LZeroMatrix
CCDPL.Math.LZeroVector
CCDPL.Math.Matrix2D	A bounded 2x2 matrix holding floating point values of type double
CCDPL.Math.Matrix2F	A bounded 2x2 matrix holding floating point values of type float
CCDPL.Math.Matrix2L	A bounded 2x2 matrix holding signed integers of type long
CCDPL.Math.Matrix2UL	A bounded 2x2 matrix holding unsigned integers of type unsigned long
CCDPL.Math.Matrix3D	A bounded 3x3 matrix holding floating point values of type double
CCDPL.Math.Matrix3F	A bounded 3x3 matrix holding floating point values of type float
CCDPL.Math.Matrix3L	A bounded 3x3 matrix holding signed integers of type long
CCDPL.Math.Matrix3UL	A bounded 3x3 matrix holding unsigned integers of type unsigned long
CCDPL.Math.Matrix4D	A bounded 4x4 matrix holding floating point values of type double
CCDPL.Math.Matrix4F	A bounded 4x4 matrix holding floating point values of type float
CCDPL.Math.Matrix4L	A bounded 4x4 matrix holding signed integers of type long
CCDPL.Math.Matrix4UL	A bounded 4x4 matrix holding unsigned integers of type unsigned long
CCDPL.Math.Range
CCDPL.Math.Slice
CCDPL.Math.SparseDMatrix	An unbounded sparse matrix holding floating point values of type double
CCDPL.Math.SparseDVector	An unbounded sparse vector holding floating point values of type double
CCDPL.Math.SparseFMatrix	An unbounded sparse matrix holding floating point values of type float
CCDPL.Math.SparseFVector	An unbounded sparse vector holding floating point values of type float
CCDPL.Math.SparseLMatrix	An unbounded sparse matrix holding signed integers of type long
CCDPL.Math.SparseLVector	An unbounded sparse vector holding signed integers of type long
CCDPL.Math.SparseULMatrix	An unbounded sparse matrix holding unsigned integers of type unsigned long
CCDPL.Math.SparseULVector	An unbounded sparse vector holding unsigned integers of type unsigned long
CCDPL.Math.ULHomogenousCoordsAdapter
CCDPL.Math.ULIdentityMatrix
CCDPL.Math.ULMatrix	An unbounded dense matrix holding unsigned integers of type unsigned long
CCDPL.Math.ULMatrixColumn
CCDPL.Math.ULMatrixRange
CCDPL.Math.ULMatrixRow
CCDPL.Math.ULMatrixSlice
CCDPL.Math.ULMatrixTranspose
CCDPL.Math.ULQuaternion
CCDPL.Math.ULQuaternionVectorAdapter
CCDPL.Math.ULRealQuaternion
CCDPL.Math.ULRotationMatrix
CCDPL.Math.ULScalarMatrix
CCDPL.Math.ULScalarVector
CCDPL.Math.ULScalingMatrix
CCDPL.Math.ULTranslationMatrix
CCDPL.Math.ULUnitVector
CCDPL.Math.ULVector	An unbounded dense vector holding unsigned integers of type unsigned long
CCDPL.Math.ULVectorQuaternionAdapter
CCDPL.Math.ULVectorRange
CCDPL.Math.ULVectorSlice
CCDPL.Math.ULZeroMatrix
CCDPL.Math.ULZeroVector
CCDPL.Math.UnitLower
CCDPL.Math.UnitUpper
CCDPL.Math.Upper
CCDPL.Math.Vector2D	A bounded 2 element vector holding floating point values of type double
►CCDPL.Math.Vector2DArray	An array of Math.Vector2D objects
►CCDPL.Vis.PointArray2D	Stores a set of points in 2D space
CCDPL.Vis.LineSegmentListPrimitive2D	A graphics primitive representing a list of disjoint line segments
CCDPL.Vis.PointListPrimitive2D	A graphics primitive representing a list of points
CCDPL.Vis.PolygonPrimitive2D	A graphics primitive representing a polygon
CCDPL.Vis.PolylinePrimitive2D	A graphics primitive representing a set of connected line segments
CCDPL.Math.Vector2DArrayAlignmentCalculator
CCDPL.Math.Vector2DArrayBFGSMinimizer
CCDPL.Math.Vector2F	A bounded 2 element vector holding floating point values of type float
CCDPL.Math.Vector2FArray	An array of Math.Vector2F objects
CCDPL.Math.Vector2FArrayAlignmentCalculator
CCDPL.Math.Vector2FArrayBFGSMinimizer
CCDPL.Math.Vector2L	A bounded 2 element vector holding signed integers of type long
CCDPL.Math.Vector2LArray	An array of Math.Vector2L objects
CCDPL.Math.Vector2UL	A bounded 2 element vector holding unsigned integers of type unsigned long
CCDPL.Math.Vector2ULArray	An array of Math.Vector2UL objects
CCDPL.Math.Vector3D	A bounded 3 element vector holding floating point values of type double
►CCDPL.Math.Vector3DArray	An array of Math.Vector3D objects
CCDPL.ConfGen.ConformerData
CCDPL.Math.Vector3DArrayAlignmentCalculator
CCDPL.Math.Vector3DArrayBFGSMinimizer
CCDPL.Math.Vector3F	A bounded 3 element vector holding floating point values of type float
CCDPL.Math.Vector3FArray	An array of Math.Vector3F objects
CCDPL.Math.Vector3FArrayAlignmentCalculator
CCDPL.Math.Vector3FArrayBFGSMinimizer
CCDPL.Math.Vector3L	A bounded 3 element vector holding signed integers of type long
CCDPL.Math.Vector3LArray	An array of Math.Vector3L objects
CCDPL.Math.Vector3UL	A bounded 3 element vector holding unsigned integers of type unsigned long
CCDPL.Math.Vector3ULArray	An array of Math.Vector3UL objects
CCDPL.Math.Vector4D	A bounded 4 element vector holding floating point values of type double
CCDPL.Math.Vector4F	A bounded 4 element vector holding floating point values of type float
CCDPL.Math.Vector4L	A bounded 4 element vector holding signed integers of type long
CCDPL.Math.Vector4UL	A bounded 4 element vector holding unsigned integers of type unsigned long
CCDPL.Math.Vector7D	A bounded 7 element vector holding floating point values of type double
CCDPL.MolProp.AtomHydrophobicityCalculator	AtomHydrophobicityCalculator
CCDPL.MolProp.AtomProperty	Provides keys for built-in MolProp.Atom properties
CCDPL.MolProp.AtomPropertyDefault	Provides default values for built-in Chem.Atom properties
CCDPL.MolProp.BondProperty	Provides keys for built-in MolProp.Bond properties
CCDPL.MolProp.CoordinationGeometry	Provides constants used to specify the spatial geometry of atom arrangements around a common central atom
CCDPL.MolProp.ElementHistogram	A data type for the storage of element histograms of chemical compounds
CCDPL.MolProp.HBondAcceptorAtomType	Provides constants used to specify the structural class of H-bond acceptor atoms
CCDPL.MolProp.HBondAcceptorAtomTyper
CCDPL.MolProp.HBondDonorAtomType	Provides constants used to specify the structural class of H-bond donor atoms
CCDPL.MolProp.HBondDonorAtomTyper
CCDPL.MolProp.LogSCalculator	LogSCalculator
CCDPL.MolProp.MassComposition	A data type for the storage of mass percent compositions of chemical compounds
CCDPL.MolProp.MHMOPiChargeCalculator	MHMOPiChargeCalculator
CCDPL.MolProp.PEOESigmaChargeCalculator	PEOESigmaChargeCalculator
CCDPL.MolProp.TPSACalculator	TPSACalculator
CCDPL.MolProp.XLogPCalculator	XLogPCalculator
CCDPL.Pharm.BoolDoubleFunctor
CCDPL.Pharm.BoolFeature2Functor
CCDPL.Pharm.BoolFeature2Matrix4DFunctor
CCDPL.Pharm.BoolFeature4Functor
CCDPL.Pharm.BoolFeatureFunctor
CCDPL.Pharm.BoolSearchHitDoubleFunctor
CCDPL.Pharm.BoolSizeType2Functor
CCDPL.Pharm.CationPiInteractionConstraint	CationPiInteractionConstraint
CCDPL.Pharm.ControlParameter	Provides keys for built-in control-parameters
CCDPL.Pharm.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.Pharm.DataFormat	Provides preinitialized Base.DataFormat objects for all supported data formats
CCDPL.Pharm.DoubleDouble2Functor
CCDPL.Pharm.DoubleDoubleFunctor
CCDPL.Pharm.DoubleFeature2Functor
CCDPL.Pharm.DoubleFeature2Matrix4DFunctor
CCDPL.Pharm.DoubleFeature2UIntFunctor
CCDPL.Pharm.DoubleFeatureFunctor
CCDPL.Pharm.DoubleSearchHitFunctor
CCDPL.Pharm.Feature3DCoordinatesFunction	A generic wrapper class used to store a user-defined Pharm.Feature 3D-coordinates function
CCDPL.Pharm.FeatureContainerIOManager	A singleton class that serves as a global registry for Pharm.FeatureContainerInputHandler and Pharm.FeatureContainerOutputHandler implementation instances
CCDPL.Pharm.FeatureContainerIOManager.InputHandlerSequence
CCDPL.Pharm.FeatureContainerIOManager.OutputHandlerSequence
►CCDPL.Pharm.FeatureContainerOutputHandler	A factory interface providing methods for the creation of Pharm.FeatureContainerWriterBase instances for data output in a particular storage format
CCDPL.Pharm.CDFBZ2FeatureContainerOutputHandler	A handler for the output of bzip2-compressed feature container data in the native I/O format of the CDPL
CCDPL.Pharm.CDFFeatureContainerOutputHandler	A handler for the output of feature container data in the native I/O format of the CDPL
CCDPL.Pharm.CDFGZFeatureContainerOutputHandler	A handler for the output of gzip-compressed feature container data in the native I/O format of the CDPL
CCDPL.Pharm.PMLFeatureContainerOutputHandler	A handler for the output of pharmacophore data in the native I/O format of LigandScout
CCDPL.Pharm.FeatureContainerProperty	Provides keys for built-in Pharm.FeatureContainer properties
CCDPL.Pharm.FeatureContainerPropertyDefault	Provides default values for built-in Pharm.FeatureContainer properties
►CCDPL.Pharm.FeatureDistanceConstraint	FeatureDistanceConstraint
CCDPL.Pharm.HydrophobicInteractionConstraint	HydrophobicInteractionConstraint
CCDPL.Pharm.IonicInteractionConstraint	IonicInteractionConstraint
►CCDPL.Pharm.FeatureGenerator	FeatureGenerator
►CCDPL.Pharm.PatternBasedFeatureGenerator	PatternBasedFeatureGenerator
CCDPL.Pharm.AromaticFeatureGenerator	AromaticFeatureGenerator
CCDPL.Pharm.HBondAcceptorFeatureGenerator	HBondAcceptorFeatureGenerator
CCDPL.Pharm.HBondDonorFeatureGenerator	HBondDonorFeatureGenerator
CCDPL.Pharm.HydrophobicAtomFeatureGenerator	HydrophobicAtomFeatureGenerator
CCDPL.Pharm.HydrophobicFeatureGenerator	HydrophobicFeatureGenerator
CCDPL.Pharm.NegIonizableFeatureGenerator	NegIonizableFeatureGenerator
CCDPL.Pharm.PosIonizableFeatureGenerator	PosIonizableFeatureGenerator
CCDPL.Pharm.XBondAcceptorFeatureGenerator	XBondAcceptorFeatureGenerator
CCDPL.Pharm.XBondDonorFeatureGenerator	XBondDonorFeatureGenerator
CCDPL.Pharm.FeatureGeometry	Provides constants for the specification of the generic geometry of a pharmacophore feature
CCDPL.Pharm.FeatureGeometryMatchFunctor	FeatureGeometryMatchFunctor
►CCDPL.Pharm.FeatureInteractionScore	FeatureInteractionScore
CCDPL.Pharm.CationPiInteractionScore	CationPiInteractionScore
►CCDPL.Pharm.FeatureDistanceScore	FeatureDistanceScore
CCDPL.Pharm.HydrophobicInteractionScore	HydrophobicInteractionScore
CCDPL.Pharm.IonicInteractionScore	IonicInteractionScore
CCDPL.Pharm.FeatureInteractionScoreCombiner	FeatureInteractionScoreCombiner
CCDPL.Pharm.HBondingInteractionScore	HBondingInteractionScore
CCDPL.Pharm.OrthogonalPiPiInteractionScore	OrthogonalPiPiInteractionScore
CCDPL.Pharm.ParallelPiPiInteractionScore	ParallelPiPiInteractionScore
CCDPL.Pharm.XBondingInteractionScore	XBondingInteractionScore
►CCDPL.Pharm.FeatureMapping	A data type for the storage and lookup of arbitrary feature to feature mappings
CCDPL.Pharm.SpatialFeatureMapping	SpatialFeatureMapping
CCDPL.Pharm.FeaturePairDistanceMatchFunctor	FeaturePairDistanceMatchFunctor
CCDPL.Pharm.FeaturePositionMatchFunctor	FeaturePositionMatchFunctor
CCDPL.Pharm.FeatureProperty	Provides keys for built-in Pharm.Feature properties
CCDPL.Pharm.FeaturePropertyDefault	Provides default values for built-in Pharm.Feature properties
CCDPL.Pharm.FeatureType	Provides constants for the specification of the generic type of a pharmacophore feature
CCDPL.Pharm.FeatureTypeHistogram	A data type for the storage of feature type histograms of pharmacophores
CCDPL.Pharm.FeatureTypeMatchFunctor	FeatureTypeMatchFunctor
CCDPL.Pharm.FileScreeningHitCollector	FileScreeningHitCollector
CCDPL.Pharm.HBondingInteractionConstraint	HBondingInteractionConstraint
►CCDPL.Pharm.InteractionAnalyzer	InteractionAnalyzer
CCDPL.Pharm.DefaultInteractionAnalyzer	DefaultInteractionAnalyzer
CCDPL.Pharm.InteractionConstraintConnector	InteractionConstraintConnector
CCDPL.Pharm.InteractionPharmacophoreGenerator	InteractionPharmacophoreGenerator
CCDPL.Pharm.OrthogonalPiPiInteractionConstraint	OrthogonalPiPiInteractionConstraint
CCDPL.Pharm.ParallelPiPiInteractionConstraint	ParallelPiPiInteractionConstraint
►CCDPL.Pharm.PharmacophoreFitScore	PharmacophoreFitScore
CCDPL.Pharm.PharmacophoreFitScreeningScore	PharmacophoreFitScreeningScore
►CCDPL.Pharm.PharmacophoreGenerator	PharmacophoreGenerator
CCDPL.Pharm.DefaultPharmacophoreGenerator	DefaultPharmacophoreGenerator
►CCDPL.Pharm.PharmacophoreInputHandler	A factory interface providing methods for the creation of Pharm.PharmacophoreReaderBase instances for reading data provided in a particular storage format
CCDPL.Pharm.CDFBZ2PharmacophoreInputHandler	A handler for the input of bzip2-compressed pharmacophore data in the native I/O format of the CDPL
CCDPL.Pharm.CDFGZPharmacophoreInputHandler	A handler for the input of gzip-compressed pharmacophore data in the native I/O format of the CDPL
CCDPL.Pharm.CDFPharmacophoreInputHandler	A handler for the input of pharmacophore data in the native I/O format of the CDPL
CCDPL.Pharm.PMLPharmacophoreInputHandler	A handler for the input of pharmacophore data in the native I/O format of LigandScout
CCDPL.Pharm.PSDPharmacophoreInputHandler	A handler for the input of pharmacophore data in the PSD-format of the CDPL
CCDPL.Pharm.PharmacophoreIOManager	A singleton class that serves as a global registry for Pharm.PharmacophoreInputHandler and Pharm.PharmacophoreOutputHandler implementation instances
CCDPL.Pharm.PharmacophoreIOManager.InputHandlerSequence
CCDPL.Pharm.PharmacophoreIOManager.OutputHandlerSequence
►CCDPL.Pharm.ScreeningDBAccessor	A class for accessing the data stored in pharmacophore screening databases
CCDPL.Pharm.PSDScreeningDBAccessor	A class for accessing pharmacophore screening databases in the built-in optimized format
►CCDPL.Pharm.ScreeningDBCreator	A class for the creation of optimized pharmacophore screening databases
CCDPL.Pharm.PSDScreeningDBCreator	A class for the creation of optimized pharmacophore screening databases
CCDPL.Pharm.ScreeningProcessor	ScreeningProcessor
CCDPL.Pharm.ScreeningProcessor.SearchHit
►CCDPL.Pharm.SpatialFeatureAlignment
CCDPL.Pharm.PharmacophoreAlignment	PharmacophoreAlignment
CCDPL.Pharm.TopologicalFeatureAlignment
CCDPL.Pharm.XBondingInteractionConstraint	XBondingInteractionConstraint
CCDPL.Shape.AlignedColorTverskyScore
CCDPL.Shape.AlignedShapeTverskyScore
CCDPL.Shape.AlignedTotalOverlapTverskyScore
CCDPL.Shape.AlignedTverskyComboScore
CCDPL.Shape.AlignmentResult
CCDPL.Shape.AlignmentResultSelectionMode
CCDPL.Shape.BoolAlignmentResult2Functor
CCDPL.Shape.BoolSizeType2Functor
CCDPL.Shape.BoolSizeTypeFunctor
CCDPL.Shape.ColorTanimotoScore
CCDPL.Shape.ColorTverskyScore
CCDPL.Shape.DoubleAlignmentResultFunctor
CCDPL.Shape.FastGaussianShapeAlignment
CCDPL.Shape.GaussianShape.Element
CCDPL.Shape.GaussianShapeAlignment
►CCDPL.Shape.GaussianShapeAlignmentStartGenerator
CCDPL.Shape.PrincipalAxesAlignmentStartGenerator
CCDPL.Shape.GaussianShapeFunction
CCDPL.Shape.GaussianShapeFunctionAlignment
CCDPL.Shape.GaussianShapeFunctionAlignment.Result
CCDPL.Shape.GaussianShapeGenerator
►CCDPL.Shape.GaussianShapeOverlapFunction
CCDPL.Shape.ExactGaussianShapeOverlapFunction
CCDPL.Shape.FastGaussianShapeOverlapFunction
CCDPL.Shape.GaussianShapeSet
CCDPL.Shape.ReferenceColorTverskyScore
CCDPL.Shape.ReferenceShapeTverskyScore
CCDPL.Shape.ReferenceTotalOverlapTverskyScore
CCDPL.Shape.ReferenceTverskyComboScore
CCDPL.Shape.ScreeningProcessor
CCDPL.Shape.ScreeningSettings
CCDPL.Shape.ShapeTanimotoScore
CCDPL.Shape.ShapeTverskyScore
CCDPL.Shape.SymmetryClass
CCDPL.Shape.TanimotoComboScore
CCDPL.Shape.TotalOverlapTanimotoScore
CCDPL.Shape.TotalOverlapTverskyScore
CCDPL.Shape.TverskyComboScore
CCDPL.Shape.Vector7D
CCDPL.Shape.VoidMolecularGraph2AlignmentResultFunctor
CCDPL.Util.BitSet	A dynamic bitset class
CCDPL.Util.BitSetArray	An array of Util.BitSet objects
CCDPL.Util.BronKerboschAlgorithm	Implementation of the Bron-Kerbosch clique-detection algorithm [BKA]
CCDPL.Util.DArray	An array of double precision floating-point numbers
CCDPL.Util.DG2DCoordinatesGenerator
CCDPL.Util.DG2DCoordinatesGenerator.DistanceConstraint
CCDPL.Util.DG2DCoordinatesGenerator.DistanceConstraintList
CCDPL.Util.DG3DCoordinatesGenerator
CCDPL.Util.DG3DCoordinatesGenerator.DistanceConstraint
CCDPL.Util.DG3DCoordinatesGenerator.DistanceConstraintList
CCDPL.Util.DG3DCoordinatesGenerator.VolumeConstraint
CCDPL.Util.DG3DCoordinatesGenerator.VolumeConstraintList
CCDPL.Util.LArray	An array of unsigned integers of type long
CCDPL.Util.SArray	An array of std::string objects
CCDPL.Util.STArray	An array of unsigned integers of type std::size_t
CCDPL.Util.STPair	A pair of unsigned integers of type std::size_t
CCDPL.Util.STPairArray	An array of pairs of unsigned integers of type std::size_t
CCDPL.Util.UIArray	An array of unsigned integers
CCDPL.Vis.Alignment	Provides flags that are used to specify the 2D alignment of graphical objects within a bounded rectangular area
CCDPL.Vis.ArrowStyle	Provides constants for the specification of reaction arrow styles in 2D depictions of chemical reactions
CCDPL.Vis.AtomColorTable	Provides preinitialized color tables for the visualization of atomic properties
CCDPL.Vis.AtomProperty	Provides keys for built-in Chem.Atom properties
CCDPL.Vis.AtomPropertyDefault	Provides default values for built-in Vis.Atom properties
CCDPL.Vis.BondProperty	Provides keys for built-in Chem.Bond properties
CCDPL.Vis.BondPropertyDefault	Provides default values for built-in Vis.Bond properties
CCDPL.Vis.Brush	Specifies the fill pattern and fill color of shapes
CCDPL.Vis.Color	Specifies a color in terms of its red, green and blue components and an alpha-channel for transparency
CCDPL.Vis.ColorTable	A container for the storage and lookup of Vis.Color objects that are associated with a numeric identifier
CCDPL.Vis.ControlParameter	Provides keys for built-in control-parameters
CCDPL.Vis.ControlParameterDefault	Provides default values for built-in control-parameters
CCDPL.Vis.DataFormat	Provides preinitialized Base.DataFormat objects for all supported image output formats
CCDPL.Vis.Font	Specifies a font for drawing text
►CCDPL.Vis.FontMetrics	An interface class with methods that provide information about the metrics of a font
CCDPL.Vis.CairoBackend.CairoFontMetrics	Implements the FontMetrics interface for the Cairo rendering backend
CCDPL.Vis.QtBackend.QtFontMetrics	Implements the FontMetrics interface for the Qt rendering backend
►CCDPL.Vis.GraphicsPrimitive2D	The abstract base class of all 2D graphics primitives
CCDPL.Vis.ClipPathPrimitive2D	A graphics primitive representing a clipping region in 2D space
CCDPL.Vis.EllipsePrimitive2D	A graphics primitive representing a ellipse
CCDPL.Vis.LinePrimitive2D	A graphics primitive representing a single line
CCDPL.Vis.LineSegmentListPrimitive2D	A graphics primitive representing a list of disjoint line segments
CCDPL.Vis.PathPrimitive2D	A graphics primitive representing an arbitrary path in 2D space
CCDPL.Vis.PointListPrimitive2D	A graphics primitive representing a list of points
CCDPL.Vis.PolygonPrimitive2D	A graphics primitive representing a polygon
CCDPL.Vis.PolylinePrimitive2D	A graphics primitive representing a set of connected line segments
CCDPL.Vis.TextLabelPrimitive2D	A graphics primitive representing a text label
CCDPL.Vis.LayoutDirection	Provides constants that are used to specify the main direction of object layouts
CCDPL.Vis.LayoutStyle	Provides constants that are used to specify the layout of a set of graphical objects
►CCDPL.Vis.Line2D	Specifies a line segment in 2D space
CCDPL.Vis.LinePrimitive2D	A graphics primitive representing a single line
CCDPL.Vis.MolecularGraphProperty	Provides keys for built-in Chem.MolecularGraph properties
CCDPL.Vis.MolecularGraphPropertyDefault	Provides default values for built-in Chem.MolecularGraph properties
►CCDPL.Vis.Path2D	Provides a container for painting operations, enabling arbitrary graphical shapes to be constructed and reused
CCDPL.Vis.ClipPathPrimitive2D	A graphics primitive representing a clipping region in 2D space
CCDPL.Vis.PathPrimitive2D	A graphics primitive representing an arbitrary path in 2D space
CCDPL.Vis.Path2DConverter	Provides an interface for classes that implement the conversion of Vis.Path2D objects into rendering backend specific path descriptions or drawing operations
CCDPL.Vis.Pen	Specifies how to draw lines and outlines of shapes
CCDPL.Vis.ReactionProperty	Provides keys for built-in Chem.Reaction properties
CCDPL.Vis.ReactionPropertyDefault	Provides default values for built-in Vis.Reaction properties
CCDPL.Vis.Rectangle2D	Specifies an axis aligned rectangular area in 2D space
►CCDPL.Vis.Renderer2D	An interface that provides methods for low level 2D drawing operations
CCDPL.Vis.CairoBackend.CairoRenderer2D	Implements the Renderer2D interface on top of the Cairo 2D Graphics Library
CCDPL.Vis.QtBackend.QtRenderer2D	Implements the Renderer2D interface on top of the Qt Toolkit
CCDPL.Vis.SizeAdjustment	Provides constants that are used to specify the size adjustment policy for graphical objects within a bounded rectangular area
CCDPL.Vis.SizeSpecification	Specifies the value and type of a size attribute and defines how the value may change during processing steps
►CException
►CCDPL.Base.Exception	The root of the CDPL exception hierarchy
CCDPL.Base.BadCast	Thrown to indicate that a cast or conversion from a given source type to a requested target type is not possible
CCDPL.Base.ItemNotFound	Thrown to indicate that some requested data item could not be found
►CCDPL.Base.OperationFailed	Thrown to indicate that some requested operation has failed (e.g
CCDPL.Base.CalculationFailed	Thrown to indicate that some requested calculation has failed
CCDPL.Base.IOError	Thrown to indicate that an I/O operation has failed because of physical (e.g
►CCDPL.Base.ValueError	Thrown to indicate errors caused by some invalid value
CCDPL.Base.NullPointerException	Thrown when an operation requires or expects a valid reference but a None reference was provided
►CCDPL.Base.RangeError	Thrown to indicate that a value is out of range
CCDPL.Base.IndexError	Thrown to indicate that an index is out of range
CCDPL.Base.SizeError	Thrown to indicate that the size of a (multidimensional) array is not correct
►CCDPL.ForceField.Error
CCDPL.ForceField.ParameterizationFailed
►CIndexError
CCDPL.Base.IndexError	Thrown to indicate that an index is out of range
►Cobject
CCDPL.Util.PropertyValue	An unary functor that retrieves the value of a given property from the Base.PropertyContainer instance provided as argument
CCDPL.Util.PropertyValueProduct	A binary functor that calculates the product of two property values retrieved from a pair of Base.PropertyContainer instances passed as argument
CCDPL.Vis.QtBackend.QtObjectFactory	Provides methods for the creation of QFont, QColor, QPen and QBrush objects from Font, Color, Pen and Brush instances
►COSError
CCDPL.Base.IOError	Thrown to indicate that an I/O operation has failed because of physical (e.g
►CValueError
CCDPL.Base.ValueError	Thrown to indicate errors caused by some invalid value