Here is a list of all documented class members with links to the class documentation for each member:

- p -

• P : CDPL.Chem.AtomType , CDPL.Chem.CIPDescriptor
• p : CDPL.Chem.CIPDescriptor
• P_3 : CDPL.Chem.SybylAtomType
• Pa : CDPL.Chem.AtomType
• PACKED : CDPL.Vis.LayoutStyle
• parameterize() : CDPL.ForceField.MMFF94AngleBendingInteractionParameterizer , CDPL.ForceField.MMFF94BondStretchingInteractionParameterizer , CDPL.ForceField.MMFF94ElectrostaticInteractionParameterizer , CDPL.ForceField.MMFF94InteractionParameterizer , CDPL.ForceField.MMFF94OutOfPlaneBendingInteractionParameterizer , CDPL.ForceField.MMFF94StretchBendInteractionParameterizer , CDPL.ForceField.MMFF94TorsionInteractionParameterizer , CDPL.ForceField.MMFF94VanDerWaalsInteractionParameterizer
• Pb : CDPL.Chem.AtomType
• Pd : CDPL.Chem.AtomType
• PDB : CDPL.Biomol.DataFormat
• PDB_BZ2 : CDPL.Biomol.DataFormat
• PDB_GZ : CDPL.Biomol.DataFormat
• PDF : CDPL.Vis.DataFormat
• PENTAGONAL_BIPYRAMIDAL : CDPL.MolProp.CoordinationGeometry
• PENTAGONAL_PLANAR : CDPL.MolProp.CoordinationGeometry
• PENTAGONAL_PYRAMIDAL : CDPL.MolProp.CoordinationGeometry
• perceive() : CDPL.Chem.AromaticRingSet , CDPL.Chem.AromaticSubstructure , CDPL.Chem.CompleteRingSet , CDPL.Chem.ComponentSet , CDPL.Chem.CyclicSubstructure , CDPL.Chem.PiElectronSystemList , CDPL.Chem.SmallestSetOfSmallestRings , CDPL.Pharm.SpatialFeatureMapping
• perceiveTypes() : CDPL.ForceField.MMFF94AtomTyper , CDPL.ForceField.MMFF94BondTyper , CDPL.MolProp.HBondAcceptorAtomTyper , CDPL.MolProp.HBondDonorAtomTyper
• performAlignment() : CDPL.Shape.FastGaussianShapeAlignment , CDPL.Shape.GaussianShapeAlignment , CDPL.Shape.GaussianShapeFunctionAlignment
• performExhaustiveSearch() : CDPL.Chem.SpatialAtomAlignment , CDPL.Chem.SpatialEntity3DAlignment , CDPL.Pharm.SpatialFeatureAlignment
• performReaction() : CDPL.Chem.Reactor
• PHARMACOPHORE_EXL_CHARGES : CDPL.Shape.ScreeningSettings.ColorFeatureType
• PHARMACOPHORE_IMP_CHARGES : CDPL.Shape.ScreeningSettings.ColorFeatureType
• PHYSIOLOGICAL_CONDITION_STATE : CDPL.Chem.ProtonationStateStandardizer.Flavor
• PI_AR_SCORE_MAX : CDPL.GRAIL.GRAILDescriptorCalculator.ElementIndex , CDPL.GRAIL.GRAILXDescriptorCalculator.ElementIndex
• PI_AR_SCORE_SUM : CDPL.GRAIL.GRAILDescriptorCalculator.ElementIndex , CDPL.GRAIL.GRAILXDescriptorCalculator.ElementIndex
• PI_COUNT : CDPL.GRAIL.GRAILDescriptorCalculator.ElementIndex , CDPL.GRAIL.GRAILXDescriptorCalculator.ElementIndex
• PI_NI_ON_CHARGED_GROUPS_ONLY : CDPL.Pharm.DefaultPharmacophoreGenerator.Configuration
• PKD : CDPL.GRAIL.BindingAffinityCalculator.AffinityMeasure
• PKD_PKI : CDPL.GRAIL.BindingAffinityCalculator.AffinityMeasure
• PKI : CDPL.GRAIL.BindingAffinityCalculator.AffinityMeasure
• PLAIN : CDPL.Chem.BondStereoFlag
• PLUS_SIGN_COLOR : CDPL.Vis.ReactionProperty
• PLUS_SIGN_LINE_WIDTH : CDPL.Vis.ReactionProperty
• PLUS_SIGN_SIZE : CDPL.Vis.ReactionProperty
• Pm : CDPL.Chem.AtomType
• PML : CDPL.Pharm.DataFormat
• PNG : CDPL.Vis.DataFormat
• Po : CDPL.Chem.AtomType
• POINT : CDPL.Math.DRegularSpatialGrid.DataMode , CDPL.Math.FRegularSpatialGrid.DataMode
• popLastElement() : CDPL.Chem.AtomMatchExpressionList , CDPL.Chem.BondMatchExpressionList , CDPL.Chem.FragmentList , CDPL.Chem.MolecularGraphMatchExpressionList , CDPL.Chem.ReactionMatchExpressionList , CDPL.Math.Vector2DArray , CDPL.Math.Vector2FArray , CDPL.Math.Vector2LArray , CDPL.Math.Vector2ULArray , CDPL.Math.Vector3DArray , CDPL.Math.Vector3FArray , CDPL.Math.Vector3LArray , CDPL.Math.Vector3ULArray , CDPL.Util.BitSetArray , CDPL.Util.DArray , CDPL.Util.LArray , CDPL.Util.SArray , CDPL.Util.STArray , CDPL.Util.STPairArray , CDPL.Util.UIArray
• POS_REF_ATOM_FLAG : CDPL.Pharm.PatternBasedFeatureGenerator.PatternAtomLabelFlag
• Pr : CDPL.Chem.AtomType
• preserveInputBondingGeometries() : CDPL.ConfGen.FragmentConformerGeneratorSettings
• process() : CDPL.ConfGen.FragmentLibraryGenerator , CDPL.Pharm.ScreeningDBCreator , CDPL.Shape.ScreeningProcessor
• processAllMatches() : CDPL.Chem.PatternAtomTyper.Pattern , CDPL.Chem.SubstructureHistogramCalculator.Pattern
• processUniqueMatchesOnly() : CDPL.Chem.PatternAtomTyper.Pattern , CDPL.Chem.SubstructureHistogramCalculator.Pattern
• PRODUCT : CDPL.Chem.ReactionRole
• proximityOptimization() : CDPL.Shape.FastGaussianShapeOverlapFunction
• PS : CDPL.Vis.DataFormat
• PSD : CDPL.Pharm.DataFormat
• Pt : CDPL.Chem.AtomType
• Pu : CDPL.Chem.AtomType