Pharm Directory Reference

Directory dependency graph for Pharm:

Files
file	Pharm/APIPrefix.hpp [code]
	Definition of the preprocessor macro CDPL_PHARM_API.
file	AromaticFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::AromaticFeatureGenerator.
file	BasicFeature.hpp [code]
	Definition of the class CDPL::Pharm::BasicFeature.
file	BasicPharmacophore.hpp [code]
	Definition of the class CDPL::Pharm::BasicPharmacophore.
file	CationPiInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::CationPiInteractionConstraint.
file	CationPiInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::CationPiInteractionScore.
file	CDFBZ2FeatureContainerOutputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFBZ2FeatureContainerOutputHandler.
file	CDFBZ2FeatureContainerWriter.hpp [code]
	Definition of the class CDPL::Pharm::CDFBZ2FeatureContainerWriter.
file	CDFBZ2PharmacophoreInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFBZ2PharmacophoreInputHandler.
file	CDFBZ2PharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::CDFBZ2PharmacophoreReader.
file	CDFFeatureContainerOutputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFFeatureContainerOutputHandler.
file	CDFFeatureContainerWriter.hpp [code]
	Definition of the class CDPL::Pharm::CDFFeatureContainerWriter.
file	CDFGZFeatureContainerOutputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFGZFeatureContainerOutputHandler.
file	CDFGZFeatureContainerWriter.hpp [code]
	Definition of the class CDPL::Pharm::CDFGZFeatureContainerWriter.
file	CDFGZPharmacophoreInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFGZPharmacophoreInputHandler.
file	CDFGZPharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::CDFGZPharmacophoreReader.
file	CDFPharmacophoreInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::CDFPharmacophoreInputHandler.
file	CDFPharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::CDFPharmacophoreReader.
file	Pharm/ControlParameter.hpp [code]
	Definition of constants in namespace CDPL::Pharm::ControlParameter.
file	Pharm/ControlParameterDefault.hpp [code]
	Definition of constants in namespace CDPL::Pharm::ControlParameterDefault.
file	Pharm/ControlParameterFunctions.hpp [code]
	Declaration of convenience functions for control-parameter handling.
file	Pharm/DataFormat.hpp [code]
	Provides the contents of namespace CDPL::Pharm::DataFormat.
file	DefaultInteractionAnalyzer.hpp [code]
	Definition of the class CDPL::Pharm::DefaultInteractionAnalyzer.
file	DefaultPharmacophoreGenerator.hpp [code]
	Definition of the class CDPL::Pharm::DefaultPharmacophoreGenerator.
file	Feature.hpp [code]
	Definition of the class CDPL::Pharm::Feature.
file	Feature3DCoordinatesFunction.hpp [code]
	Type definition of a generic wrapper class for storing user-defined Pharm::Feature 3D-coordinates functions.
file	FeatureContainer.hpp [code]
	Definition of the class CDPL::Pharm::FeatureContainer.
file	FeatureContainerFunctions.hpp [code]
	Declaration of functions that operate on Pharm::FeatureContainer instances.
file	FeatureContainerProperty.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeatureContainerProperty.
file	FeatureContainerPropertyDefault.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeatureContainerPropertyDefault.
file	FeatureContainerWriter.hpp [code]
	Definition of the class CDPL::Pharm::FeatureContainerWriter.
file	FeatureDistanceConstraint.hpp [code]
	Definition of the class CDPL::Pharm::FeatureDistanceConstraint.
file	FeatureDistanceScore.hpp [code]
	Definition of the class CDPL::Pharm::FeatureDistanceScore.
file	Pharm/FeatureFunctions.hpp [code]
	Declaration of functions that operate on Pharm::Feature instances.
file	FeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::FeatureGenerator.
file	FeatureGeometry.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeatureGeometry.
file	FeatureGeometryMatchFunctor.hpp [code]
	Definition of the class CDPL::Pharm::FeatureGeometryMatchFunctor.
file	FeatureInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::FeatureInteractionScore.
file	FeatureInteractionScoreCombiner.hpp [code]
	Definition of the class CDPL::Pharm::FeatureInteractionScoreCombiner.
file	FeatureMapping.hpp [code]
	Definition of the type CDPL::Pharm::FeatureMapping.
file	FeaturePairDistanceMatchFunctor.hpp [code]
	Definition of the class CDPL::Pharm::FeaturePairDistanceMatchFunctor.
file	FeaturePositionMatchFunctor.hpp [code]
	Definition of the class CDPL::Pharm::FeaturePositionMatchFunctor.
file	FeatureProperty.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeatureProperty.
file	FeaturePropertyDefault.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeaturePropertyDefault.
file	FeatureSet.hpp [code]
	Definition of the class CDPL::Pharm::FeatureSet.
file	FeatureSetFunctions.hpp [code]
	Declaration of functions that operate on Pharm::FeatureSet instances.
file	Pharm/FeatureType.hpp [code]
	Definition of constants in namespace CDPL::Pharm::FeatureType.
file	FeatureTypeHistogram.hpp [code]
	Definition of the type CDPL::Pharm::FeatureTypeHistogram.
file	FeatureTypeMatchFunctor.hpp [code]
	Definition of the class CDPL::Pharm::FeatureTypeMatchFunctor.
file	FileScreeningHitCollector.hpp [code]
	Definition of the class CDPL::Pharm::FileScreeningHitCollector.
file	HBondAcceptorFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::HBondAcceptorFeatureGenerator.
file	HBondDonorFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::HBondDonorFeatureGenerator.
file	HBondingInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::HBondingInteractionConstraint.
file	HBondingInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::HBondingInteractionScore.
file	HydrophobicAtomFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::HydrophobicAtomFeatureGenerator.
file	HydrophobicFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::HydrophobicFeatureGenerator.
file	HydrophobicInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::HydrophobicInteractionConstraint.
file	HydrophobicInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::HydrophobicInteractionScore.
file	InteractionAnalyzer.hpp [code]
	Definition of the class CDPL::Pharm::InteractionAnalyzer.
file	InteractionConstraintConnector.hpp [code]
	Definition of the class CDPL::Pharm::InteractionConstraintConnector.
file	InteractionPharmacophoreGenerator.hpp [code]
	Definition of the class CDPL::Pharm::InteractionPharmacophoreGenerator.
file	IonicInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::IonicInteractionConstraint.
file	IonicInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::IonicInteractionScore.
file	Pharm/MoleculeFunctions.hpp [code]
	Declaration of functions that operate on Chem::Molecule instances.
file	NegIonizableFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::NegIonizableFeatureGenerator.
file	OrthogonalPiPiInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::OrthogonalPiPiInteractionConstraint.
file	OrthogonalPiPiInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::OrthogonalPiPiInteractionScore.
file	ParallelPiPiInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::ParallelPiPiInteractionConstraint.
file	ParallelPiPiInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::ParallelPiPiInteractionScore.
file	PatternBasedFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::PatternBasedFeatureGenerator.
file	Pharmacophore.hpp [code]
	Definition of the class CDPL::Pharm::Pharmacophore.
file	PharmacophoreAlignment.hpp [code]
	Definition of the class CDPL::Pharm::PharmacophoreAlignment.
file	PharmacophoreFitScore.hpp [code]
	Definition of the class CDPL::Pharm::PharmacophoreFitScore.
file	PharmacophoreFitScreeningScore.hpp [code]
	Definition of the class CDPL::Pharm::PharmacophoreFitScreeningScore.
file	PharmacophoreFunctions.hpp [code]
	Declaration of functions that operate on Pharm::Pharmacophore instances.
file	PharmacophoreGenerator.hpp [code]
	Definition of the class CDPL::Pharm::PharmacophoreGenerator.
file	PharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::PharmacophoreReader.
file	PMLFeatureContainerOutputHandler.hpp [code]
	Definition of the class CDPL::Pharm::PMLFeatureContainerOutputHandler.
file	PMLFeatureContainerWriter.hpp [code]
	Definition of the class CDPL::Pharm::PMLFeatureContainerWriter.
file	PMLPharmacophoreInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::PMLPharmacophoreInputHandler.
file	PMLPharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::PMLPharmacophoreReader.
file	PosIonizableFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::PosIonizableFeatureGenerator.
file	PSDMolecularGraphOutputHandler.hpp [code]
	Definition of the class CDPL::Pharm::PSDMolecularGraphOutputHandler.
file	PSDMolecularGraphWriter.hpp [code]
	Definition of the class CDPL::Pharm::PSDMolecularGraphWriter.
file	PSDMoleculeInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::PSDMoleculeInputHandler.
file	PSDMoleculeReader.hpp [code]
	Definition of the class CDPL::Pharm::PSDMoleculeReader.
file	PSDPharmacophoreInputHandler.hpp [code]
	Definition of the class CDPL::Pharm::PSDPharmacophoreInputHandler.
file	PSDPharmacophoreReader.hpp [code]
	Definition of the class CDPL::Pharm::PSDPharmacophoreReader.
file	PSDScreeningDBAccessor.hpp [code]
	Definition of the class CDPL::Pharm::PSDScreeningDBAccessor.
file	PSDScreeningDBCreator.hpp [code]
	Definition of the class CDPL::Pharm::PSDScreeningDBCreator.
file	ScreeningDBAccessor.hpp [code]
	Definition of the class CDPL::Pharm::ScreeningDBAccessor.
file	ScreeningDBCreator.hpp [code]
	Definition of the class CDPL::Pharm::ScreeningDBCreator.
file	Pharm/ScreeningProcessor.hpp [code]
	Definition of the class CDPL::Pharm::ScreeningProcessor.
file	SpatialFeatureMapping.hpp [code]
	Definition of the class CDPL::Pharm::SpatialFeatureMapping.
file	Pharm/UtilityFunctions.hpp [code]
	Declaration of miscellaneous utility functions.
file	XBondAcceptorFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::XBondAcceptorFeatureGenerator.
file	XBondDonorFeatureGenerator.hpp [code]
	Definition of the class CDPL::Pharm::XBondDonorFeatureGenerator.
file	XBondingInteractionConstraint.hpp [code]
	Definition of the class CDPL::Pharm::XBondingInteractionConstraint.
file	XBondingInteractionScore.hpp [code]
	Definition of the class CDPL::Pharm::XBondingInteractionScore.