- a -

• angle : CDPL::Chem::Atom2DCoordinatesCalculator::LGNode::NodeLayoutInfo
• atom1ID : CDPL::Chem::PatternBasedTautomerizationRule::BondOrderChange
• atom2ID : CDPL::Chem::PatternBasedTautomerizationRule::BondOrderChange

- b -

• BLACK : CDPL::Vis::Color
• BLUE : CDPL::Vis::Color

- c -

• center : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• color : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• COORDS_DIM : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• CYAN : CDPL::Vis::Color

- d -

• DARK_BLUE : CDPL::Vis::Color
• DARK_CYAN : CDPL::Vis::Color
• DARK_GRAY : CDPL::Vis::Color
• DARK_GREEN : CDPL::Vis::Color
• DARK_MAGENTA : CDPL::Vis::Color
• DARK_RED : CDPL::Vis::Color
• DARK_YELLOW : CDPL::Vis::Color
• DEF_ATOM_PROPERTY_FLAGS : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::CanonicalNumberingCalculator , CDPL::Chem::DefaultMultiConfMoleculeInputProcessor , CDPL::Chem::HashCodeCalculator , CDPL::Chem::SymmetryClassCalculator , CDPL::Descr::CircularFingerprintGenerator , CDPL::Descr::PathFingerprintGenerator
• DEF_BOND_PROPERTY_FLAGS : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::CanonicalNumberingCalculator , CDPL::Chem::DefaultMultiConfMoleculeInputProcessor , CDPL::Chem::HashCodeCalculator , CDPL::Chem::SymmetryClassCalculator , CDPL::Descr::CircularFingerprintGenerator , CDPL::Descr::PathFingerprintGenerator
• DEF_CYCLE_STEP_COUNT_FACTOR : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_DAMPING_FACTOR : CDPL::MolProp::PEOESigmaChargeCalculator
• DEF_DIELECTRIC_CONSTANT : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer
• DEF_DISTANCE_CUTOFF : CDPL::GRAIL::AtomDensityGridCalculator , CDPL::GRAIL::FeatureInteractionScoreGridCalculator , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunction
• DEF_DISTANCE_EXPONENT : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer
• DEF_FEATURE_GEOM : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FEATURE_TOL : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FEATURE_TYPE : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FTR_GEOM_MATCH_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_FTR_MATCH_COUNT_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_FTR_POS_MATCH_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_GRID_OVERSIZE : CDPL::Chem::SurfaceAtomExtractor
• DEF_GRID_STEP_SIZE : CDPL::Chem::SurfaceAtomExtractor , CDPL::GRAIL::GRAILDataSetGenerator
• DEF_HYD_THRESHOLD : CDPL::Pharm::HydrophobicAtomFeatureGenerator
• DEF_HYD_THRESHOLD_CHAIN : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_HYD_THRESHOLD_GROUP : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_HYD_THRESHOLD_RING : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_LEARNING_RATE_DECREMENT : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_MAX_ACC_ANGLE : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore , CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MAX_ANGLE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_AR_ORIENTATION_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_AX_DISTANCE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MAX_DISTANCE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::HydrophobicInteractionConstraint , CDPL::Pharm::HydrophobicInteractionScore , CDPL::Pharm::IonicInteractionConstraint , CDPL::Pharm::IonicInteractionScore
• DEF_MAX_H_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_HB_LENGTH : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MAX_HBA_INTERACTION_DIR_ANGLE : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_HBA_ORIENTATION_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_HBD_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_NUM_SYMMETRY_MAPPINGS : CDPL::ConfGen::RMSDConformerSelector
• DEF_MAX_OPTIMIZATION_ITERATIONS : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• DEF_MAX_PRODUCT_ORDER : CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunction
• DEF_MAX_RANDOM_TRANSLATION : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DEF_MAX_V_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_XBA_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_XBD_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MIN_AHD_ANGLE : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MIN_AX_DISTANCE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MIN_AXB_ANGLE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MIN_DISTANCE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::HydrophobicInteractionConstraint , CDPL::Pharm::HydrophobicInteractionScore , CDPL::Pharm::IonicInteractionConstraint , CDPL::Pharm::IonicInteractionScore
• DEF_MIN_H_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore
• DEF_MIN_HB_LENGTH : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MIN_SURFACE_ACC : CDPL::Chem::SurfaceAtomExtractor
• DEF_MIN_V_DISTANCE : CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MIN_VDW_SURFACE_DISTANCE : CDPL::GRAIL::BuriednessScore
• DEF_NUM_CYCLES : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_NUM_ITERATIONS : CDPL::MolProp::PEOESigmaChargeCalculator
• DEF_NUM_RANDOM_STARTS : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DEF_NUM_TEST_POINTS : CDPL::Chem::SurfaceAtomExtractor
• DEF_NUM_TEST_RAYS : CDPL::GRAIL::BuriednessScore
• DEF_OPTIMIZATION_STOP_GRADIENT : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• DEF_PROBE_RADIUS : CDPL::Chem::SurfaceAtomExtractor , CDPL::GRAIL::BuriednessScore , CDPL::GRAIL::GeneralizedBellAtomDensity
• DEF_RADIUS_SCALING_FACTOR : CDPL::GRAIL::GeneralizedBellAtomDensity , CDPL::Shape::FastGaussianShapeOverlapFunction
• DEF_RESULT_SELECTION_MODE : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment
• DEF_START_LEARNING_RATE : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_SYMMETRY_THRESHOLD : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DEFAULT : CDPL::ConfGen::ConformerGeneratorSettings , CDPL::ConfGen::DGConstraintGeneratorSettings , CDPL::ConfGen::DGStructureGeneratorSettings , CDPL::ConfGen::FragmentAssemblerSettings , CDPL::ConfGen::FragmentConformerGeneratorSettings , CDPL::ConfGen::StructureGeneratorSettings , CDPL::ConfGen::TorsionDriverSettings , CDPL::Shape::ScreeningSettings
• defValue : CDPL::Util::MapDefaultValue< ValueType, Allow > , CDPL::Util::MultiMapDefaultValue< ValueType, Allow >
• delta : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• DIELECTRIC_CONSTANT_WATER : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer

- e -

• edge : CDPL::Chem::Atom2DCoordinatesCalculator::LGNode::NodeLayoutInfo

- f -

• FAST : CDPL::ConfGen::FragmentConformerGeneratorSettings
• FEATURE_VECTOR_SIZE : CDPL::MolProp::LogSCalculator , CDPL::MolProp::XLogPCalculator

- g -

• GRAY : CDPL::Vis::Color
• GREEN : CDPL::Vis::Color

- l -

• LARGE_SET_DENSE : CDPL::ConfGen::ConformerGeneratorSettings
• LARGE_SET_DIVERSE : CDPL::ConfGen::ConformerGeneratorSettings
• LIGAND_DESCRIPTOR_SIZE : CDPL::GRAIL::GRAILDescriptorCalculator , CDPL::GRAIL::GRAILXDescriptorCalculator
• LIGHT_GRAY : CDPL::Vis::Color

- m -

• MAGENTA : CDPL::Vis::Color
• MaxSize : CDPL::Math::BoundedVector< T, N >
• MaxSize1 : CDPL::Math::BoundedMatrix< T, M, N >
• MaxSize2 : CDPL::Math::BoundedMatrix< T, M, N >
• MEDIUM_SET_DENSE : CDPL::ConfGen::ConformerGeneratorSettings
• MEDIUM_SET_DIVERSE : CDPL::ConfGen::ConformerGeneratorSettings

- n -

• NO_CUTOFF : CDPL::Shape::ScreeningSettings
• NONE : CDPL::Base::LookupKey
• NUM_TYPES : CDPL::ForceField::MMFF94PrimaryToParameterAtomTypeMap::Entry

- o -

• orderChange : CDPL::Chem::PatternBasedTautomerizationRule::BondOrderChange

- r -

• radius : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• RED : CDPL::Vis::Color

- s -

• Size : CDPL::Math::CVector< T, N >
• Size1 : CDPL::Math::CMatrix< T, M, N >
• Size2 : CDPL::Math::CMatrix< T, M, N >
• SMALL_SET_DENSE : CDPL::ConfGen::ConformerGeneratorSettings
• SMALL_SET_DIVERSE : CDPL::ConfGen::ConformerGeneratorSettings

- t -

• THOROUGH : CDPL::ConfGen::FragmentConformerGeneratorSettings
• TOTAL_DESCRIPTOR_SIZE : CDPL::GRAIL::GRAILDescriptorCalculator , CDPL::GRAIL::GRAILXDescriptorCalculator
• TRANSPARENT : CDPL::Vis::Color

- v -

• volume : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element

- w -

• weightFactor : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• WHITE : CDPL::Vis::Color

- y -

• YELLOW : CDPL::Vis::Color