- r -

• Range() : CDPL::Math::Range< S >
• RangeError() : CDPL::Base::RangeError
• RDFCodeCalculator() : CDPL::Descr::RDFCodeCalculator< T >
• RDFReactionReader() : CDPL::Chem::RDFReactionReader
• RDFReactionWriter() : CDPL::Chem::RDFReactionWriter
• ReactionAtomMappingMatchExpression() : CDPL::Chem::ReactionAtomMappingMatchExpression
• ReactionComponentGroupingMatchExpression() : CDPL::Chem::ReactionComponentGroupingMatchExpression
• ReactionSubstructureSearch() : CDPL::Chem::ReactionSubstructureSearch
• ReactionView2D() : CDPL::Vis::ReactionView2D
• Reactor() : CDPL::Chem::Reactor
• read() : CDPL::Base::DataReader< T > , CDPL::Pharm::PSDMoleculeReader , CDPL::Pharm::PSDPharmacophoreReader , CDPL::Util::CompoundDataReader< DataType > , CDPL::Util::CompressedDataReader< ReaderImpl, DecompStream, DataType > , CDPL::Util::FileDataReader< ReaderImpl, DataType > , CDPL::Util::MultiFormatDataReader< DataType > , CDPL::Util::StreamDataReader< DataType, ReaderImpl >
• real() : CDPL::Math::ComplexTraits< T > , CDPL::Math::ScalarTraits< T >
• RealQuaternion() : CDPL::Math::RealQuaternion< T >
• RECAPFragmentGenerator() : CDPL::Chem::RECAPFragmentGenerator
• Rectangle2D() : CDPL::Vis::Rectangle2D
• reference() : CDPL::Vis::CairoPointerTraits< cairo_pattern_t > , CDPL::Vis::CairoPointerTraits< cairo_surface_t > , CDPL::Vis::CairoPointerTraits< cairo_t >
• ReferenceColorTverskyScore() : CDPL::Shape::ReferenceColorTverskyScore
• ReferenceShapeTverskyScore() : CDPL::Shape::ReferenceShapeTverskyScore
• ReferenceTotalOverlapTverskyScore() : CDPL::Shape::ReferenceTotalOverlapTverskyScore
• ReferenceTverskyComboScore() : CDPL::Shape::ReferenceTverskyComboScore
• regardAtomConfiguration() : CDPL::ConfGen::DGConstraintGeneratorSettings
• regardBondConfiguration() : CDPL::ConfGen::DGConstraintGeneratorSettings
• regardIsotopes() : CDPL::Chem::TautomerGenerator
• regardStereochemistry() : CDPL::Chem::TautomerGenerator
• registerCopyPostprocessingFunction() : CDPL::Chem::Molecule , CDPL::Chem::Reaction
• registerInputHandler() : CDPL::Base::DataIOManager< T >
• registerIOCallback() : CDPL::Base::DataIOBase
• registerOutputHandler() : CDPL::Base::DataIOManager< T >
• registerParameterChangedCallback() : CDPL::Base::ControlParameterContainer
• registerParameterRemovedCallback() : CDPL::Base::ControlParameterContainer
• registerParentChangedCallback() : CDPL::Base::ControlParameterContainer
• RegularGrid() : CDPL::Grid::RegularGrid< T, CVT >
• RegularSpatialGrid() : CDPL::Math::RegularSpatialGrid< T, C, GD, XF >
• release() : CDPL::Util::FileRemover , CDPL::Vis::CairoPointer< T >
• remove() : CDPL::Chem::BasicMolecule , CDPL::Chem::Molecule , CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::Pharmacophore
• removeAngle() : CDPL::ConfGen::TorsionRule
• removeAtom() : CDPL::Chem::BasicMolecule , CDPL::Chem::ElectronSystem , CDPL::Chem::Fragment , CDPL::Chem::Molecule
• removeBond() : CDPL::Chem::BasicMolecule , CDPL::Chem::Fragment , CDPL::Chem::Molecule
• removeCategory() : CDPL::ConfGen::TorsionCategory
• removeComponent() : CDPL::Chem::BasicReaction , CDPL::Chem::Reaction
• removeComponents() : CDPL::Chem::BasicReaction , CDPL::Chem::Reaction
• removeConstraintFunction() : CDPL::Pharm::InteractionAnalyzer
• removeDistanceConstraint() : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• removeElement() : CDPL::Shape::GaussianShape , CDPL::Util::Array< ValueType > , CDPL::Util::IndirectArray< ValueType, PointerType, NullPointerCheck >
• removeElements() : CDPL::Util::Array< ValueType > , CDPL::Util::IndirectArray< ValueType, PointerType, NullPointerCheck >
• removeEntries() : CDPL::Util::Map< Key, Value, AllowDefValues, KeyCompFunc > , CDPL::Util::MultiMap< Key, Value, AllowDefValues, KeyCompFunc >
• removeEntry() : CDPL::Biomol::ResidueDictionary , CDPL::Chem::AtomDictionary , CDPL::ConfGen::FragmentLibrary , CDPL::ForceField::MMFF94AngleBendingParameterTable , CDPL::ForceField::MMFF94AromaticAtomTypeDefinitionTable , CDPL::ForceField::MMFF94AtomTypePropertyTable , CDPL::ForceField::MMFF94BondChargeIncrementTable , CDPL::ForceField::MMFF94BondStretchingParameterTable , CDPL::ForceField::MMFF94BondStretchingRuleParameterTable , CDPL::ForceField::MMFF94DefaultStretchBendParameterTable , CDPL::ForceField::MMFF94FormalAtomChargeDefinitionTable , CDPL::ForceField::MMFF94HeavyToHydrogenAtomTypeMap , CDPL::ForceField::MMFF94OutOfPlaneBendingParameterTable , CDPL::ForceField::MMFF94PartialBondChargeIncrementTable , CDPL::ForceField::MMFF94PrimaryToParameterAtomTypeMap , CDPL::ForceField::MMFF94StretchBendParameterTable , CDPL::ForceField::MMFF94SymbolicAtomTypePatternTable , CDPL::ForceField::MMFF94SymbolicToNumericAtomTypeMap , CDPL::ForceField::MMFF94TorsionParameterTable , CDPL::ForceField::MMFF94VanDerWaalsParameterTable , CDPL::ForceField::UFFAtomTypePropertyTable , CDPL::Util::Map< Key, Value, AllowDefValues, KeyCompFunc > , CDPL::Util::MultiMap< Key, Value, AllowDefValues, KeyCompFunc >
• removeExcludePattern() : CDPL::Chem::FragmentGenerator
• removeFeature() : CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::FeatureSet , CDPL::Pharm::Pharmacophore
• removeFeatureGenerator() : CDPL::Pharm::PharmacophoreGenerator
• removeFileExtension() : CDPL::Base::DataFormat
• removeFragmentationRule() : CDPL::Chem::FragmentGenerator
• removeGridName() : CDPL::GRAIL::GRAILDataSetGenerator
• removeParameter() : CDPL::Base::ControlParameterContainer
• removePattern() : CDPL::Chem::PatternAtomTyper , CDPL::Chem::SubstructureHistogramCalculator
• removeProperty() : CDPL::Base::PropertyContainer
• removeReader() : CDPL::Util::CompoundDataReader< DataType >
• removeRecord() : CDPL::Biomol::PDBData
• removeResonanceDuplicates() : CDPL::Chem::TautomerGenerator
• removeRule() : CDPL::ConfGen::TorsionCategory
• removeScoringFunction() : CDPL::GRAIL::GRAILDataSetGenerator
• removeTautomerizationRule() : CDPL::Chem::TautomerGenerator
• removeVolumeConstraint() : CDPL::Util::DGCoordinatesGenerator< 3, T >
• render() : CDPL::Vis::ClipPathPrimitive2D , CDPL::Vis::EllipsePrimitive2D , CDPL::Vis::GraphicsPrimitive2D , CDPL::Vis::LinePrimitive2D , CDPL::Vis::LineSegmentListPrimitive2D , CDPL::Vis::PathPrimitive2D , CDPL::Vis::PointListPrimitive2D , CDPL::Vis::PolygonPrimitive2D , CDPL::Vis::PolylinePrimitive2D , CDPL::Vis::ReactionView2D , CDPL::Vis::StructureView2D , CDPL::Vis::TextLabelPrimitive2D , CDPL::Vis::View2D
• renderMolGraphImage() : CDPL::Vis::ImageWriter
• renderReactionImage() : CDPL::Vis::ImageWriter
• requiresAtomBondMapping() : CDPL::Chem::AtomConfigurationMatchExpression , CDPL::Chem::BondConfigurationMatchExpression , CDPL::Chem::BondSubstituentDirectionMatchExpression , CDPL::Chem::MatchExpression< ObjType1, ObjType2 > , CDPL::Chem::MatchExpression< ObjType, void > , CDPL::Chem::MatchExpressionList< ObjType1, ObjType2 > , CDPL::Chem::MolecularGraphComponentGroupingMatchExpression , CDPL::Chem::NOTMatchExpression< ObjType1, ObjType2 > , CDPL::Chem::NOTMatchExpression< ObjType, void > , CDPL::Chem::ReactionAtomMappingMatchExpression , CDPL::Chem::ReactionComponentGroupingMatchExpression
• reserve() : CDPL::Util::Array< ValueType >
• reserveMemoryForAtoms() : CDPL::Chem::BasicMolecule , CDPL::Chem::Fragment , CDPL::Chem::Molecule
• reserveMemoryForBonds() : CDPL::Chem::BasicMolecule , CDPL::Chem::Fragment , CDPL::Chem::Molecule
• reset() : CDPL::Chem::ConnectedSubstructureSet , CDPL::Chem::SpatialEntityAlignment< T > , CDPL::Chem::TopologicalEntityAlignment< T > , CDPL::Shape::GaussianShapeFunction , CDPL::Util::FileRemover , CDPL::Vis::CairoPointer< T > , CDPL::Vis::Rectangle2D
• resetFixedAtomMask() : CDPL::ForceField::MMFF94GradientCalculator< ValueType >
• ResidueList() : CDPL::Biomol::ResidueList
• resize() : CDPL::Math::BoundedMatrix< T, M, N > , CDPL::Math::BoundedVector< T, N > , CDPL::Math::Grid< T, A > , CDPL::Math::IdentityMatrix< T > , CDPL::Math::Matrix< T, A > , CDPL::Math::RegularSpatialGrid< T, C, GD, XF > , CDPL::Math::RotationMatrix< T > , CDPL::Math::ScalarGrid< T > , CDPL::Math::ScalarMatrix< T > , CDPL::Math::ScalarVector< T > , CDPL::Math::ScalingMatrix< T > , CDPL::Math::SparseMatrix< T, A > , CDPL::Math::SparseVector< T, A > , CDPL::Math::TranslationMatrix< T > , CDPL::Math::UnitVector< T > , CDPL::Math::Vector< T, A > , CDPL::Math::ZeroGrid< T > , CDPL::Math::ZeroMatrix< T > , CDPL::Math::ZeroVector< T > , CDPL::Util::Array< ValueType >
• resizeDataSet() : CDPL::Math::MLRModel< T >
• resonanceDuplicatesRemoved() : CDPL::Chem::TautomerGenerator
• ResonanceStructureGenerator() : CDPL::Chem::ResonanceStructureGenerator
• restoreState() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• Result() : CDPL::Shape::GaussianShapeFunctionAlignment::Result
• ringBondsIncluded() : CDPL::Chem::StereoisomerGenerator
• RMSDConformerSelector() : CDPL::ConfGen::RMSDConformerSelector
• RotationMatrix() : CDPL::Math::RotationMatrix< T >
• RXNReactionReader() : CDPL::Chem::RXNReactionReader
• RXNReactionWriter() : CDPL::Chem::RXNReactionWriter