Here is a list of all class members with links to the classes they belong to:

- d -

• DARK_BLUE : CDPL::Vis::Color
• DARK_CYAN : CDPL::Vis::Color
• DARK_GRAY : CDPL::Vis::Color
• DARK_GREEN : CDPL::Vis::Color
• DARK_MAGENTA : CDPL::Vis::Color
• DARK_RED : CDPL::Vis::Color
• DARK_YELLOW : CDPL::Vis::Color
• DASH_DOT_DOT_LINE : CDPL::Vis::Pen
• DASH_DOT_LINE : CDPL::Vis::Pen
• DASH_LINE : CDPL::Vis::Pen
• DataFormat() : CDPL::Base::DataFormat
• DataIOBase() : CDPL::Base::DataIOBase
• DataMode : CDPL::Math::RegularSpatialGrid< T, C, GD, XF >
• DataType : CDPL::Base::DataReader< T > , CDPL::Base::DataWriter< T >
• DBREF : CDPL::Biomol::PDBData
• DBREF1 : CDPL::Biomol::PDBData
• DBREF2 : CDPL::Biomol::PDBData
• DecompFilter : CDPL::Util::CompressionAlgoTraits< BZIP2 > , CDPL::Util::CompressionAlgoTraits< GZIP >
• decompInput() : CDPL::Util::CompressionStreamBase< CompAlgo, StreamType >
• DecompressionIStream() : CDPL::Util::DecompressionIStream< CompAlgo, CharT, TraitsT >
• DEF_ATOM_PROPERTY_FLAGS : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::CanonicalNumberingCalculator , CDPL::Chem::DefaultMultiConfMoleculeInputProcessor , CDPL::Chem::HashCodeCalculator , CDPL::Chem::SymmetryClassCalculator , CDPL::Descr::CircularFingerprintGenerator , CDPL::Descr::PathFingerprintGenerator
• DEF_BOND_PROPERTY_FLAGS : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::CanonicalNumberingCalculator , CDPL::Chem::DefaultMultiConfMoleculeInputProcessor , CDPL::Chem::HashCodeCalculator , CDPL::Chem::SymmetryClassCalculator , CDPL::Descr::CircularFingerprintGenerator , CDPL::Descr::PathFingerprintGenerator
• DEF_CYCLE_STEP_COUNT_FACTOR : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_DAMPING_FACTOR : CDPL::MolProp::PEOESigmaChargeCalculator
• DEF_DIELECTRIC_CONSTANT : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer
• DEF_DISTANCE_CUTOFF : CDPL::GRAIL::AtomDensityGridCalculator , CDPL::GRAIL::FeatureInteractionScoreGridCalculator , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunction
• DEF_DISTANCE_EXPONENT : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer
• DEF_FEATURE_GEOM : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FEATURE_TOL : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FEATURE_TYPE : CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_FTR_GEOM_MATCH_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_FTR_MATCH_COUNT_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_FTR_POS_MATCH_WEIGHT : CDPL::Pharm::PharmacophoreFitScore
• DEF_GRID_OVERSIZE : CDPL::Chem::SurfaceAtomExtractor
• DEF_GRID_STEP_SIZE : CDPL::Chem::SurfaceAtomExtractor , CDPL::GRAIL::GRAILDataSetGenerator
• DEF_HYD_THRESHOLD : CDPL::Pharm::HydrophobicAtomFeatureGenerator
• DEF_HYD_THRESHOLD_CHAIN : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_HYD_THRESHOLD_GROUP : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_HYD_THRESHOLD_RING : CDPL::Pharm::HydrophobicFeatureGenerator
• DEF_LEARNING_RATE_DECREMENT : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_MAX_ACC_ANGLE : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore , CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MAX_ANGLE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_AR_ORIENTATION_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_AX_DISTANCE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MAX_DISTANCE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::HydrophobicInteractionConstraint , CDPL::Pharm::HydrophobicInteractionScore , CDPL::Pharm::IonicInteractionConstraint , CDPL::Pharm::IonicInteractionScore
• DEF_MAX_H_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_HB_LENGTH : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MAX_HBA_INTERACTION_DIR_ANGLE : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_HBA_ORIENTATION_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_HBD_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_NUM_SYMMETRY_MAPPINGS : CDPL::ConfGen::RMSDConformerSelector
• DEF_MAX_OPTIMIZATION_ITERATIONS : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• DEF_MAX_PRODUCT_ORDER : CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunction
• DEF_MAX_RANDOM_TRANSLATION : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DEF_MAX_V_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MAX_XBA_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MAX_XBD_INTERACTION_DIR_DEVIATION : CDPL::Pharm::FeatureGeometryMatchFunctor
• DEF_MIN_AHD_ANGLE : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MIN_AX_DISTANCE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MIN_AXB_ANGLE : CDPL::Pharm::XBondingInteractionConstraint , CDPL::Pharm::XBondingInteractionScore
• DEF_MIN_DISTANCE : CDPL::Pharm::CationPiInteractionConstraint , CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::HydrophobicInteractionConstraint , CDPL::Pharm::HydrophobicInteractionScore , CDPL::Pharm::IonicInteractionConstraint , CDPL::Pharm::IonicInteractionScore
• DEF_MIN_H_DISTANCE : CDPL::Pharm::OrthogonalPiPiInteractionConstraint , CDPL::Pharm::OrthogonalPiPiInteractionScore
• DEF_MIN_HB_LENGTH : CDPL::Pharm::HBondingInteractionConstraint , CDPL::Pharm::HBondingInteractionScore
• DEF_MIN_SURFACE_ACC : CDPL::Chem::SurfaceAtomExtractor
• DEF_MIN_V_DISTANCE : CDPL::Pharm::ParallelPiPiInteractionConstraint , CDPL::Pharm::ParallelPiPiInteractionScore
• DEF_MIN_VDW_SURFACE_DISTANCE : CDPL::GRAIL::BuriednessScore
• DEF_NUM_CYCLES : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_NUM_ITERATIONS : CDPL::MolProp::PEOESigmaChargeCalculator
• DEF_NUM_RANDOM_STARTS : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DEF_NUM_TEST_POINTS : CDPL::Chem::SurfaceAtomExtractor
• DEF_NUM_TEST_RAYS : CDPL::GRAIL::BuriednessScore
• DEF_OPTIMIZATION_STOP_GRADIENT : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• DEF_PROBE_RADIUS : CDPL::Chem::SurfaceAtomExtractor , CDPL::GRAIL::BuriednessScore , CDPL::GRAIL::GeneralizedBellAtomDensity
• DEF_RADIUS_SCALING_FACTOR : CDPL::GRAIL::GeneralizedBellAtomDensity , CDPL::Shape::FastGaussianShapeOverlapFunction
• DEF_RESULT_SELECTION_MODE : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment
• DEF_START_LEARNING_RATE : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DEF_SYMMETRY_THRESHOLD : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• DefAtomDescriptorFunctor() : CDPL::Descr::PathFingerprintGenerator::DefAtomDescriptorFunctor
• DefAtomHashSeedFunctor() : CDPL::Chem::HashCodeCalculator::DefAtomHashSeedFunctor
• DefAtomIdentifierFunctor() : CDPL::Descr::CircularFingerprintGenerator::DefAtomIdentifierFunctor
• DEFAULT : CDPL::ConfGen::ConformerGeneratorSettings , CDPL::ConfGen::DGConstraintGeneratorSettings , CDPL::ConfGen::DGStructureGeneratorSettings , CDPL::ConfGen::FragmentAssemblerSettings , CDPL::ConfGen::FragmentConformerGeneratorSettings , CDPL::ConfGen::StructureGeneratorSettings , CDPL::ConfGen::TorsionDriverSettings , CDPL::Shape::ScreeningSettings
• DEFAULT_CONFIG : CDPL::Pharm::DefaultPharmacophoreGenerator
• DefaultInteractionAnalyzer() : CDPL::Pharm::DefaultInteractionAnalyzer
• DefaultMultiConfMoleculeInputProcessor() : CDPL::Chem::DefaultMultiConfMoleculeInputProcessor
• DefaultPharmacophoreGenerator() : CDPL::Pharm::DefaultPharmacophoreGenerator
• DefaultTautomerGenerator() : CDPL::Chem::DefaultTautomerGenerator
• DefBondDescriptorFunctor() : CDPL::Descr::PathFingerprintGenerator::DefBondDescriptorFunctor
• DefBondHashSeedFunctor() : CDPL::Chem::HashCodeCalculator::DefBondHashSeedFunctor
• DefBondIdentifierFunctor() : CDPL::Descr::CircularFingerprintGenerator::DefBondIdentifierFunctor
• defValue : CDPL::Util::MapDefaultValue< ValueType, Allow > , CDPL::Util::MultiMapDefaultValue< ValueType, Allow >
• delta : CDPL::Shape::FastGaussianShapeAlignment::ShapeData::Element
• DELTAF_REACHED : CDPL::Math::BFGSMinimizer< VA, VT, FVT >
• DENSE1_PATTERN : CDPL::Vis::Brush
• DENSE2_PATTERN : CDPL::Vis::Brush
• DENSE3_PATTERN : CDPL::Vis::Brush
• DENSE4_PATTERN : CDPL::Vis::Brush
• DENSE5_PATTERN : CDPL::Vis::Brush
• DENSE6_PATTERN : CDPL::Vis::Brush
• DENSE7_PATTERN : CDPL::Vis::Brush
• DensityCombinationFunction : CDPL::GRAIL::AtomDensityGridCalculator
• DensityFunction : CDPL::GRAIL::AtomDensityGridCalculator
• DEPOSITION_DATE : CDPL::Biomol::PDBData
• destroy() : CDPL::Vis::CairoPointerTraits< cairo_pattern_t > , CDPL::Vis::CairoPointerTraits< cairo_surface_t > , CDPL::Vis::CairoPointerTraits< cairo_t >
• DestructorFunction : CDPL::Util::ObjectPool< T >
• DGConstraintGenerator() : CDPL::ConfGen::DGConstraintGenerator
• DGConstraintGeneratorSettings() : CDPL::ConfGen::DGConstraintGeneratorSettings
• DGCoordinatesGeneratorBase() : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DGCoordinatesGeneratorBase< 3, T, DGCoordinatesGenerator< 3, T > > : CDPL::Util::DGCoordinatesGenerator< 3, T >
• DGStructureGenerator() : CDPL::ConfGen::DGStructureGenerator
• DGStructureGeneratorSettings() : CDPL::ConfGen::DGStructureGeneratorSettings
• DIAG_CROSS_PATTERN : CDPL::Vis::Brush
• DIELECTRIC_CONSTANT_WATER : CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer
• DifferenceType : CDPL::Math::BoundedMatrix< T, M, N > , CDPL::Math::BoundedVector< T, N > , CDPL::Math::CMatrix< T, M, N > , CDPL::Math::CVector< T, N > , CDPL::Math::Grid< T, A > , CDPL::Math::GridBinary1< E1, E2, F > , CDPL::Math::GridReference< G > , CDPL::Math::GridUnary< E, F > , CDPL::Math::HomogenousCoordsAdapter< V > , CDPL::Math::IdentityMatrix< T > , CDPL::Math::InitListMatrix< T > , CDPL::Math::InitListVector< T > , CDPL::Math::Matrix1VectorBinary< E1, E2, F > , CDPL::Math::Matrix2VectorBinary< E1, E2, F > , CDPL::Math::Matrix< T, A > , CDPL::Math::MatrixBinary1< E1, E2, F > , CDPL::Math::MatrixBinary2< E1, E2, F > , CDPL::Math::MatrixColumn< M > , CDPL::Math::MatrixRange< M > , CDPL::Math::MatrixReference< M > , CDPL::Math::MatrixRow< M > , CDPL::Math::MatrixSlice< M > , CDPL::Math::MatrixTranspose< M > , CDPL::Math::MatrixUnary< E, F > , CDPL::Math::QuaternionVectorAdapter< Q > , CDPL::Math::QuaternionVectorBinary< E1, E2, F > , CDPL::Math::RegularSpatialGrid< T, C, GD, XF > , CDPL::Math::RotationMatrix< T > , CDPL::Math::Scalar1GridBinary< E1, E2, F > , CDPL::Math::Scalar1MatrixBinary< E1, E2, F > , CDPL::Math::Scalar1VectorBinary< E1, E2, F > , CDPL::Math::Scalar2GridBinary< E1, E2, F > , CDPL::Math::Scalar2MatrixBinary< E1, E2, F > , CDPL::Math::Scalar2VectorBinary< E1, E2, F > , CDPL::Math::ScalarGrid< T > , CDPL::Math::ScalarMatrix< T > , CDPL::Math::ScalarVector< T > , CDPL::Math::ScalingMatrix< T > , CDPL::Math::Slice< S, D > , CDPL::Math::SparseMatrix< T, A > , CDPL::Math::SparseVector< T, A > , CDPL::Math::TranslationMatrix< T > , CDPL::Math::TriangularAdapter< M, Tri > , CDPL::Math::UnitVector< T > , CDPL::Math::Vector< T, A > , CDPL::Math::VectorBinary1< E1, E2, F > , CDPL::Math::VectorBinary2< E1, E2, F > , CDPL::Math::VectorMatrixBinary< E1, E2, F > , CDPL::Math::VectorMatrixUnary< E, F > , CDPL::Math::VectorRange< V > , CDPL::Math::VectorReference< V > , CDPL::Math::VectorSlice< V > , CDPL::Math::VectorUnary< E, F > , CDPL::Math::ZeroGrid< T > , CDPL::Math::ZeroMatrix< T > , CDPL::Math::ZeroVector< T >
• diminishScoresByAtomDensity() : CDPL::GRAIL::GRAILDataSetGenerator
• DirectAssignmentProxy() : CDPL::Math::DirectAssignmentProxy< C >
• distance_to() : CDPL::Util::IndexedElementIterator< ValueType, AccessFunc, IndexType >
• DistanceConstraint() : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >::DistanceConstraint
• DistanceConstraintIterator : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• DistanceScoringFunction : CDPL::Pharm::CationPiInteractionScore , CDPL::Pharm::FeatureDistanceScore , CDPL::Pharm::HBondingInteractionScore , CDPL::Pharm::OrthogonalPiPiInteractionScore , CDPL::Pharm::ParallelPiPiInteractionScore , CDPL::Pharm::XBondingInteractionScore
• distanceToIntervalsCenterRoundingEnabled() : CDPL::Descr::MoleculeRDFDescriptorCalculator , CDPL::Descr::PharmacophoreRDFDescriptorCalculator , CDPL::Descr::RDFCodeCalculator< T >
• DONOR : CDPL::ForceField::MMFF94VanDerWaalsInteraction
• dot() : CDPL::Math::MinimizerVariableArrayTraits< A > , CDPL::Math::MinimizerVariableArrayTraits< std::vector< V > > , CDPL::Math::MinimizerVariableArrayTraits< VectorArray< V > >
• DOT_LINE : CDPL::Vis::Pen
• drawEllipse() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawLine() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawLineSegments() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawPath() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawPoint() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawPolygon() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawPolyline() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawRectangle() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• drawText() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• DUPLICATE_COMPONENTS_REMOVED : CDPL::Chem::ChEMBLStandardizer