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• ParallelPiPiInteractionConstraint() : CDPL::Pharm::ParallelPiPiInteractionConstraint
• ParallelPiPiInteractionScore() : CDPL::Pharm::ParallelPiPiInteractionScore
• ParameterizationFailed() : CDPL::ForceField::ParameterizationFailed
• parameterize() : CDPL::ForceField::MMFF94AngleBendingInteractionParameterizer , CDPL::ForceField::MMFF94BondStretchingInteractionParameterizer , CDPL::ForceField::MMFF94ElectrostaticInteractionParameterizer , CDPL::ForceField::MMFF94InteractionParameterizer , CDPL::ForceField::MMFF94OutOfPlaneBendingInteractionParameterizer , CDPL::ForceField::MMFF94StretchBendInteractionParameterizer , CDPL::ForceField::MMFF94TorsionInteractionParameterizer , CDPL::ForceField::MMFF94VanDerWaalsInteractionParameterizer
• Path2D() : CDPL::Vis::Path2D
• PathFingerprintGenerator() : CDPL::Descr::PathFingerprintGenerator
• PathPrimitive2D() : CDPL::Vis::PathPrimitive2D
• Pattern() : CDPL::Chem::PatternAtomTyper::Pattern , CDPL::Chem::SubstructureHistogramCalculator::Pattern
• PatternAtomTyper() : CDPL::Chem::PatternAtomTyper
• PatternBasedFeatureGenerator() : CDPL::Pharm::PatternBasedFeatureGenerator
• PatternBasedTautomerizationRule() : CDPL::Chem::PatternBasedTautomerizationRule
• PDBData() : CDPL::Biomol::PDBData
• PDBMolecularGraphWriter() : CDPL::Biomol::PDBMolecularGraphWriter
• PDBMoleculeReader() : CDPL::Biomol::PDBMoleculeReader
• PDFMolecularGraphWriter() : CDPL::Vis::PDFMolecularGraphWriter
• PDFReactionWriter() : CDPL::Vis::PDFReactionWriter
• Pen() : CDPL::Vis::Pen
• PEOESigmaChargeCalculator() : CDPL::MolProp::PEOESigmaChargeCalculator
• perceive() : CDPL::Chem::AromaticRingSet , CDPL::Chem::AromaticSubstructure , CDPL::Chem::CompleteRingSet , CDPL::Chem::ComponentSet , CDPL::Chem::CyclicSubstructure , CDPL::Chem::PiElectronSystemList , CDPL::Chem::SmallestSetOfSmallestRings , CDPL::Pharm::SpatialFeatureMapping
• perceiveSSSR() : CDPL::ConfGen::CanonicalFragment
• perceiveTypes() : CDPL::ForceField::MMFF94AtomTyper , CDPL::ForceField::MMFF94BondTyper , CDPL::MolProp::HBondAcceptorAtomTyper , CDPL::MolProp::HBondDonorAtomTyper
• performAlignment() : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• performExhaustiveSearch() : CDPL::Chem::SpatialEntityAlignment< T >
• performReaction() : CDPL::Chem::Reactor
• PharmacophoreAlignment() : CDPL::Pharm::PharmacophoreAlignment
• PharmacophoreAutoCorr3DDescriptorCalculator() : CDPL::Descr::PharmacophoreAutoCorr3DDescriptorCalculator
• PharmacophoreFitScore() : CDPL::Pharm::PharmacophoreFitScore
• PharmacophoreFitScreeningScore() : CDPL::Pharm::PharmacophoreFitScreeningScore
• PharmacophoreGenerator() : CDPL::Pharm::PharmacophoreGenerator
• PharmacophoreRDFDescriptorCalculator() : CDPL::Descr::PharmacophoreRDFDescriptorCalculator
• PhosphinicAcidTautomerization() : CDPL::Chem::PhosphinicAcidTautomerization
• PiElectronSystemList() : CDPL::Chem::PiElectronSystemList
• plusAssign() : CDPL::Math::BoundedMatrix< T, M, N > , CDPL::Math::BoundedVector< T, N > , CDPL::Math::CMatrix< T, M, N > , CDPL::Math::CVector< T, N > , CDPL::Math::Grid< T, A > , CDPL::Math::GridReference< G > , CDPL::Math::HomogenousCoordsAdapter< V > , CDPL::Math::Matrix< T, A > , CDPL::Math::MatrixColumn< M > , CDPL::Math::MatrixRange< M > , CDPL::Math::MatrixReference< M > , CDPL::Math::MatrixRow< M > , CDPL::Math::MatrixSlice< M > , CDPL::Math::MatrixTranspose< M > , CDPL::Math::Quaternion< T > , CDPL::Math::QuaternionReference< Q > , CDPL::Math::QuaternionVectorAdapter< Q > , CDPL::Math::RealQuaternion< T > , CDPL::Math::RegularSpatialGrid< T, C, GD, XF > , CDPL::Math::SparseMatrix< T, A > , CDPL::Math::SparseVector< T, A > , CDPL::Math::Vector< T, A > , CDPL::Math::VectorQuaternionAdapter< V > , CDPL::Math::VectorRange< V > , CDPL::Math::VectorReference< V > , CDPL::Math::VectorSlice< V >
• PMLFeatureContainerWriter() : CDPL::Pharm::PMLFeatureContainerWriter
• PMLPharmacophoreReader() : CDPL::Pharm::PMLPharmacophoreReader
• PNGMolecularGraphWriter() : CDPL::Vis::PNGMolecularGraphWriter
• PNGReactionWriter() : CDPL::Vis::PNGReactionWriter
• PointListPrimitive2D() : CDPL::Vis::PointListPrimitive2D
• PolygonPrimitive2D() : CDPL::Vis::PolygonPrimitive2D
• PolylinePrimitive2D() : CDPL::Vis::PolylinePrimitive2D
• popLastElement() : CDPL::Util::Array< ValueType >
• PosIonizableFeatureGenerator() : CDPL::Pharm::PosIonizableFeatureGenerator
• preserveInputBondingGeometries() : CDPL::ConfGen::FragmentConformerGeneratorSettings
• PrincipalAxesAlignmentStartGenerator() : CDPL::Shape::PrincipalAxesAlignmentStartGenerator
• process() : CDPL::ConfGen::FragmentLibraryGenerator , CDPL::Pharm::PSDScreeningDBCreator , CDPL::Pharm::ScreeningDBCreator , CDPL::Shape::ScreeningProcessor
• processAllMatches() : CDPL::Chem::PatternAtomTyper::Pattern , CDPL::Chem::SubstructureHistogramCalculator::Pattern
• processUniqueMatchesOnly() : CDPL::Chem::PatternAtomTyper::Pattern , CDPL::Chem::SubstructureHistogramCalculator::Pattern
• PropertyContainer() : CDPL::Base::PropertyContainer
• PropertyMatchExpression() : CDPL::Chem::PropertyMatchExpression< ValueType, MatchFunc, ObjType1, ObjType2 > , CDPL::Chem::PropertyMatchExpression< ValueType, MatchFunc, ObjType, void >
• PropertyValue() : CDPL::Util::PropertyValue< T >
• PropertyValueProduct() : CDPL::Util::PropertyValueProduct< ResType, PropertyValueType >
• ProtonationStateStandardizer() : CDPL::Chem::ProtonationStateStandardizer
• proximityOptimization() : CDPL::Shape::FastGaussianShapeOverlapFunction
• PSDMolecularGraphWriter() : CDPL::Pharm::PSDMolecularGraphWriter
• PSDMoleculeReader() : CDPL::Pharm::PSDMoleculeReader
• PSDPharmacophoreReader() : CDPL::Pharm::PSDPharmacophoreReader
• PSDScreeningDBAccessor() : CDPL::Pharm::PSDScreeningDBAccessor
• PSDScreeningDBCreator() : CDPL::Pharm::PSDScreeningDBCreator
• PSMolecularGraphWriter() : CDPL::Vis::PSMolecularGraphWriter
• PSReactionWriter() : CDPL::Vis::PSReactionWriter
• put() : CDPL::Util::ObjectStack< T >
• putAll() : CDPL::Util::ObjectStack< T >