- c -

• CairoFontMetrics() : CDPL::Vis::CairoFontMetrics
• CairoPointer() : CDPL::Vis::CairoPointer< T >
• CairoRenderer2D() : CDPL::Vis::CairoRenderer2D
• calcAtomDensityGrid() : CDPL::GRAIL::GRAILDataSetGenerator
• calcCentroid() : CDPL::Pharm::PatternBasedFeatureGenerator , CDPL::Shape::GaussianShapeFunction
• calcColorOverlap() : CDPL::Shape::ExactGaussianShapeOverlapFunction , CDPL::Shape::FastGaussianShapeOverlapFunction , CDPL::Shape::GaussianShapeOverlapFunction
• calcColorOverlaps() : CDPL::Shape::GaussianShapeAlignment , CDPL::Shape::GaussianShapeFunctionAlignment
• calcColorSelfOverlap() : CDPL::Shape::ExactGaussianShapeOverlapFunction , CDPL::Shape::FastGaussianShapeOverlapFunction , CDPL::Shape::GaussianShapeFunctionAlignment , CDPL::Shape::GaussianShapeOverlapFunction
• calcColorSelfOverlaps() : CDPL::Shape::GaussianShapeAlignment
• calcDensity() : CDPL::Shape::GaussianShapeFunction
• calcInteractionGrids() : CDPL::GRAIL::GRAILDataSetGenerator
• calcOverlap() : CDPL::Shape::ExactGaussianShapeOverlapFunction , CDPL::Shape::FastGaussianShapeOverlapFunction , CDPL::Shape::GaussianShapeOverlapFunction
• calcOverlapGradient() : CDPL::Shape::ExactGaussianShapeOverlapFunction , CDPL::Shape::FastGaussianShapeOverlapFunction , CDPL::Shape::GaussianShapeOverlapFunction
• calcPlaneFeatureOrientation() : CDPL::Pharm::PatternBasedFeatureGenerator
• calcQuadrupoleTensor() : CDPL::Shape::GaussianShapeFunction
• calcSelfOverlap() : CDPL::Shape::ExactGaussianShapeOverlapFunction , CDPL::Shape::FastGaussianShapeOverlapFunction , CDPL::Shape::GaussianShapeFunctionAlignment , CDPL::Shape::GaussianShapeOverlapFunction
• calcSelfOverlaps() : CDPL::Shape::GaussianShapeAlignment
• calcStatistics() : CDPL::Math::MLRModel< T >
• calcSurfaceArea() : CDPL::Shape::GaussianShapeFunction
• calculate() : CDPL::Chem::Atom2DCoordinatesCalculator , CDPL::Chem::BondOrderCalculator , CDPL::Chem::BondStereoFlagCalculator , CDPL::Chem::CanonicalNumberingCalculator , CDPL::Chem::CIPPriorityCalculator , CDPL::Chem::HashCodeCalculator , CDPL::Chem::Hydrogen3DCoordinatesCalculator , CDPL::Chem::KekuleStructureCalculator , CDPL::Chem::MorganNumberingCalculator , CDPL::Chem::SubstructureHistogramCalculator , CDPL::Chem::SymmetryClassCalculator , CDPL::Descr::AtomAutoCorrelation3DVectorCalculator , CDPL::Descr::AtomRDFCodeCalculator , CDPL::Descr::AutoCorrelation2DVectorCalculator , CDPL::Descr::AutoCorrelation3DVectorCalculator< T > , CDPL::Descr::BCUTDescriptorCalculator , CDPL::Descr::FeatureAutoCorrelation3DVectorCalculator , CDPL::Descr::FeatureRDFCodeCalculator , CDPL::Descr::MolecularComplexityCalculator , CDPL::Descr::MoleculeAutoCorr2DDescriptorCalculator , CDPL::Descr::MoleculeAutoCorr3DDescriptorCalculator , CDPL::Descr::MoleculeRDFDescriptorCalculator , CDPL::Descr::PharmacophoreAutoCorr3DDescriptorCalculator , CDPL::Descr::PharmacophoreRDFDescriptorCalculator , CDPL::Descr::RDFCodeCalculator< T > , CDPL::ForceField::MMFF94ChargeCalculator , CDPL::GRAIL::AtomDensityGridCalculator , CDPL::GRAIL::BuriednessGridCalculator , CDPL::GRAIL::FeatureInteractionScoreGridCalculator , CDPL::GRAIL::GRAILDescriptorCalculator , CDPL::GRAIL::GRAILXDescriptorCalculator , CDPL::Math::VectorArrayAlignmentCalculator< VA, V, T > , CDPL::MolProp::AtomHydrophobicityCalculator , CDPL::MolProp::LogSCalculator , CDPL::MolProp::MHMOPiChargeCalculator , CDPL::MolProp::PEOESigmaChargeCalculator , CDPL::MolProp::TPSACalculator , CDPL::MolProp::XLogPCalculator
• CalculationFailed() : CDPL::Base::CalculationFailed
• calcVecFeatureOrientation() : CDPL::Pharm::PatternBasedFeatureGenerator
• calcVolume() : CDPL::Shape::GaussianShapeFunction
• calcYValue() : CDPL::Math::MLRModel< T >
• CanonicalFragment() : CDPL::ConfGen::CanonicalFragment
• CanonicalNumberingCalculator() : CDPL::Chem::CanonicalNumberingCalculator
• carbonBond12ChargesMinimized() : CDPL::Chem::ResonanceStructureGenerator
• CationPiInteractionConstraint() : CDPL::Pharm::CationPiInteractionConstraint
• CationPiInteractionScore() : CDPL::Pharm::CationPiInteractionScore
• CDFDRegularGridReader() : CDPL::Grid::CDFDRegularGridReader
• CDFDRegularGridSetReader() : CDPL::Grid::CDFDRegularGridSetReader
• CDFDRegularGridSetWriter() : CDPL::Grid::CDFDRegularGridSetWriter
• CDFDRegularGridWriter() : CDPL::Grid::CDFDRegularGridWriter
• CDFFeatureContainerWriter() : CDPL::Pharm::CDFFeatureContainerWriter
• CDFMolecularGraphWriter() : CDPL::Chem::CDFMolecularGraphWriter
• CDFMoleculeReader() : CDPL::Chem::CDFMoleculeReader
• CDFPharmacophoreReader() : CDPL::Pharm::CDFPharmacophoreReader
• CDFReactionReader() : CDPL::Chem::CDFReactionReader
• CDFReactionWriter() : CDPL::Chem::CDFReactionWriter
• CFLMoleculeReader() : CDPL::ConfGen::CFLMoleculeReader
• checkAtomConfigurations() : CDPL::ConfGen::DGStructureGenerator
• checkBondConfigurations() : CDPL::ConfGen::DGStructureGenerator
• checkIfNonEmpty() : CDPL::Util::Array< ValueType >
• checkIndex() : CDPL::Util::Array< ValueType >
• checkIterator() : CDPL::Util::Array< ValueType >
• checkXVolumeClashes() : CDPL::Pharm::ScreeningProcessor
• ChEMBLStandardizer() : CDPL::Chem::ChEMBLStandardizer
• chiralityIncluded() : CDPL::Descr::CircularFingerprintGenerator
• CIPConfigurationLabeler() : CDPL::Chem::CIPConfigurationLabeler
• CIPPriorityCalculator() : CDPL::Chem::CIPPriorityCalculator
• CircularFingerprintGenerator() : CDPL::Descr::CircularFingerprintGenerator
• clear() : CDPL::Base::Any , CDPL::Biomol::PDBData , CDPL::Biomol::ResidueDictionary , CDPL::Chem::AtomBondMapping , CDPL::Chem::AtomDictionary , CDPL::Chem::BasicMolecule , CDPL::Chem::BasicReaction , CDPL::Chem::ElectronSystem , CDPL::Chem::Fragment , CDPL::Chem::Molecule , CDPL::Chem::PatternAtomTyper , CDPL::Chem::Reaction , CDPL::Chem::SubstructureHistogramCalculator , CDPL::ConfGen::CanonicalFragment , CDPL::ConfGen::FragmentLibrary , CDPL::ConfGen::TorsionCategory , CDPL::ConfGen::TorsionRule , CDPL::ForceField::GradientVectorTraits< GV > , CDPL::ForceField::GradientVectorTraits< Math::VectorArray< V > > , CDPL::ForceField::GradientVectorTraits< std::vector< V > > , CDPL::ForceField::MMFF94AngleBendingParameterTable , CDPL::ForceField::MMFF94AromaticAtomTypeDefinitionTable , CDPL::ForceField::MMFF94AtomTypePropertyTable , CDPL::ForceField::MMFF94BondChargeIncrementTable , CDPL::ForceField::MMFF94BondStretchingParameterTable , CDPL::ForceField::MMFF94BondStretchingRuleParameterTable , CDPL::ForceField::MMFF94DefaultStretchBendParameterTable , CDPL::ForceField::MMFF94FormalAtomChargeDefinitionTable , CDPL::ForceField::MMFF94HeavyToHydrogenAtomTypeMap , CDPL::ForceField::MMFF94InteractionData , CDPL::ForceField::MMFF94OutOfPlaneBendingParameterTable , CDPL::ForceField::MMFF94PartialBondChargeIncrementTable , CDPL::ForceField::MMFF94PrimaryToParameterAtomTypeMap , CDPL::ForceField::MMFF94StretchBendParameterTable , CDPL::ForceField::MMFF94SymbolicAtomTypePatternTable , CDPL::ForceField::MMFF94SymbolicToNumericAtomTypeMap , CDPL::ForceField::MMFF94TorsionParameterTable , CDPL::ForceField::MMFF94VanDerWaalsParameterTable , CDPL::ForceField::UFFAtomTypePropertyTable , CDPL::Math::BoundedMatrix< T, M, N > , CDPL::Math::BoundedVector< T, N > , CDPL::Math::CMatrix< T, M, N > , CDPL::Math::CVector< T, N > , CDPL::Math::Grid< T, A > , CDPL::Math::Matrix< T, A > , CDPL::Math::MinimizerVariableArrayTraits< A > , CDPL::Math::MinimizerVariableArrayTraits< std::vector< V > > , CDPL::Math::MinimizerVariableArrayTraits< VectorArray< V > > , CDPL::Math::RegularSpatialGrid< T, C, GD, XF > , CDPL::Math::SparseMatrix< T, A > , CDPL::Math::SparseVector< T, A > , CDPL::Math::Vector< T, A > , CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::FeatureSet , CDPL::Pharm::Pharmacophore , CDPL::Shape::GaussianShape , CDPL::Util::Array< ValueType > , CDPL::Util::CompoundDataReader< DataType > , CDPL::Util::Map< Key, Value, AllowDefValues, KeyCompFunc > , CDPL::Util::MultiMap< Key, Value, AllowDefValues, KeyCompFunc > , CDPL::Vis::Path2D
• clearAtomMappingConstraints() : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::SubstructureSearch
• clearBondMappingConstraints() : CDPL::Chem::AutomorphismGroupSearch , CDPL::Chem::SubstructureSearch
• clearClipPath() : CDPL::Vis::CairoRenderer2D , CDPL::Vis::QtRenderer2D , CDPL::Vis::Renderer2D
• clearConformers() : CDPL::ConfGen::FragmentLibraryEntry
• clearDataSet() : CDPL::Math::MLRModel< T >
• clearDistanceConstraints() : CDPL::Util::DGCoordinatesGeneratorBase< Dim, T, Derived >
• clearEnabledFeatures() : CDPL::Pharm::PharmacophoreGenerator
• clearEnabledInteractions() : CDPL::GRAIL::GRAILDataSetGenerator
• clearEnergyWindowRanges() : CDPL::ConfGen::ConformerGeneratorSettings
• clearEntities() : CDPL::Chem::SpatialEntityAlignment< T > , CDPL::Chem::TopologicalEntityAlignment< T >
• clearExcludePatterns() : CDPL::Chem::FragmentGenerator , CDPL::Chem::PatternBasedTautomerizationRule , CDPL::Pharm::PatternBasedFeatureGenerator
• clearFileExtensions() : CDPL::Base::DataFormat
• clearFilterFunctions() : CDPL::ForceField::MMFF94InteractionParameterizer
• clearFragmentationRules() : CDPL::Chem::FragmentGenerator
• clearFragmentLibraries() : CDPL::ConfGen::ConformerGenerator , CDPL::ConfGen::FragmentAssembler , CDPL::ConfGen::StructureGenerator
• clearIncludePatterns() : CDPL::Pharm::PatternBasedFeatureGenerator
• clearInputCoordinates() : CDPL::ConfGen::TorsionDriver
• clearIOCallbacks() : CDPL::Base::DataIOBase
• clearMaxNumOutputConformersRanges() : CDPL::ConfGen::ConformerGeneratorSettings
• clearMinRMSDRanges() : CDPL::ConfGen::ConformerGeneratorSettings
• clearParameters() : CDPL::Base::ControlParameterContainer
• clearProperties() : CDPL::Base::PropertyContainer
• clearQuerySet() : CDPL::Shape::ScreeningProcessor
• clearReferenceShapes() : CDPL::Shape::FastGaussianShapeAlignment , CDPL::Shape::GaussianShapeAlignment
• clearTorsionLibraries() : CDPL::ConfGen::ConformerGenerator , CDPL::ConfGen::StructureGenerator , CDPL::ConfGen::TorsionDriver
• clearVolumeConstraints() : CDPL::Util::DGCoordinatesGenerator< 3, T >
• clipBeginAgainstLineSeg() : CDPL::Vis::Line2D
• clipBeginAgainstRectangle() : CDPL::Vis::Line2D
• clipEndAgainstLineSeg() : CDPL::Vis::Line2D
• clipEndAgainstRectangle() : CDPL::Vis::Line2D
• ClipPathPrimitive2D() : CDPL::Vis::ClipPathPrimitive2D
• clone() : CDPL::Chem::BasicMolecule , CDPL::Chem::BasicReaction , CDPL::Chem::Fragment , CDPL::Chem::MolecularGraph , CDPL::Chem::PatternBasedTautomerizationRule , CDPL::Chem::Reaction , CDPL::Chem::TautomerizationRule , CDPL::ConfGen::CanonicalFragment , CDPL::Pharm::AromaticFeatureGenerator , CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::FeatureGenerator , CDPL::Pharm::HydrophobicAtomFeatureGenerator , CDPL::Pharm::HydrophobicFeatureGenerator , CDPL::Pharm::PatternBasedFeatureGenerator , CDPL::Pharm::Pharmacophore , CDPL::Pharm::PharmacophoreGenerator , CDPL::Vis::ClipPathPrimitive2D , CDPL::Vis::EllipsePrimitive2D , CDPL::Vis::GraphicsPrimitive2D , CDPL::Vis::LinePrimitive2D , CDPL::Vis::LineSegmentListPrimitive2D , CDPL::Vis::PathPrimitive2D , CDPL::Vis::PointListPrimitive2D , CDPL::Vis::PolygonPrimitive2D , CDPL::Vis::PolylinePrimitive2D , CDPL::Vis::TextLabelPrimitive2D
• close() : CDPL::Base::DataReader< T > , CDPL::Base::DataWriter< T > , CDPL::Pharm::PMLFeatureContainerWriter , CDPL::Pharm::PSDMolecularGraphWriter , CDPL::Pharm::PSDScreeningDBAccessor , CDPL::Pharm::PSDScreeningDBCreator , CDPL::Pharm::ScreeningDBAccessor , CDPL::Pharm::ScreeningDBCreator , CDPL::Util::CompressedDataReader< ReaderImpl, DecompStream, DataType > , CDPL::Util::CompressedDataWriter< WriterImpl, CompStream, DataType > , CDPL::Util::CompressedIOStream< CompAlgo, CharT, TraitsT > , CDPL::Util::CompressionOStream< CompAlgo, CharT, TraitsT > , CDPL::Util::DecompressionIStream< CompAlgo, CharT, TraitsT > , CDPL::Util::FileDataReader< ReaderImpl, DataType > , CDPL::Util::FileDataWriter< WriterImpl, DataType > , CDPL::Util::MultiFormatDataReader< DataType > , CDPL::Util::MultiFormatDataWriter< DataType >
• closePath() : CDPL::Vis::Path2D , CDPL::Vis::Path2DConverter
• closeTmpFile() : CDPL::Util::CompressionStreamBase< CompAlgo, StreamType >
• CMatrix() : CDPL::Math::CMatrix< T, M, N >
• Color() : CDPL::Vis::Color
• ColorTable() : CDPL::Vis::ColorTable
• ColorTverskyScore() : CDPL::Shape::ColorTverskyScore
• CommonConnectedSubstructureSearch() : CDPL::Chem::CommonConnectedSubstructureSearch
• CompleteRingSet() : CDPL::Chem::CompleteRingSet
• ComponentSet() : CDPL::Chem::ComponentSet
• CompoundDataReader() : CDPL::Util::CompoundDataReader< DataType >
• compOutput() : CDPL::Util::CompressionStreamBase< CompAlgo, StreamType >
• CompressedDataReader() : CDPL::Util::CompressedDataReader< ReaderImpl, DecompStream, DataType >
• CompressedDataWriter() : CDPL::Util::CompressedDataWriter< WriterImpl, CompStream, DataType >
• CompressedIOStream() : CDPL::Util::CompressedIOStream< CompAlgo, CharT, TraitsT >
• CompressionOStream() : CDPL::Util::CompressionOStream< CompAlgo, CharT, TraitsT >
• CompressionStreamBase() : CDPL::Util::CompressionStreamBase< CompAlgo, StreamType >
• ConformerData() : CDPL::ConfGen::ConformerData
• ConformerGenerator() : CDPL::ConfGen::ConformerGenerator
• ConformerGeneratorSettings() : CDPL::ConfGen::ConformerGeneratorSettings
• conj() : CDPL::Math::ComplexTraits< T > , CDPL::Math::ScalarTraits< T >
• connected() : CDPL::Chem::ElectronSystem
• ConnectedSubstructureSet() : CDPL::Chem::ConnectedSubstructureSet
• contains() : CDPL::Chem::ElectronSystem
• containsAtom() : CDPL::Chem::Atom , CDPL::Chem::AtomContainer , CDPL::Chem::BasicAtom , CDPL::Chem::BasicBond , CDPL::Chem::BasicMolecule , CDPL::Chem::Bond , CDPL::Chem::ElectronSystem , CDPL::Chem::Fragment , CDPL::Chem::Molecule , CDPL::ConfGen::CanonicalFragment
• containsBond() : CDPL::Chem::Atom , CDPL::Chem::BasicAtom , CDPL::Chem::BasicMolecule , CDPL::Chem::BondContainer , CDPL::Chem::Fragment , CDPL::Chem::Molecule , CDPL::ConfGen::CanonicalFragment
• containsComponent() : CDPL::Chem::BasicReaction , CDPL::Chem::Reaction
• containsEntry() : CDPL::Biomol::ResidueDictionary , CDPL::Chem::AtomDictionary , CDPL::ConfGen::FragmentLibrary , CDPL::Util::Map< Key, Value, AllowDefValues, KeyCompFunc >
• containsFeature() : CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::FeatureContainer , CDPL::Pharm::FeatureSet , CDPL::Pharm::Pharmacophore
• containsLocalPoint() : CDPL::Math::RegularSpatialGrid< T, C, GD, XF >
• containsPoint() : CDPL::Math::RegularSpatialGrid< T, C, GD, XF > , CDPL::Vis::Line2D , CDPL::Vis::Rectangle2D
• containsRecord() : CDPL::Biomol::PDBData
• containsRectangle() : CDPL::Vis::Rectangle2D
• ControlParameterContainer() : CDPL::Base::ControlParameterContainer
• ControlParameterList() : CDPL::Base::ControlParameterList
• convert() : CDPL::Vis::Path2D
• copy() : CDPL::Chem::BasicMolecule , CDPL::Chem::BasicReaction , CDPL::Chem::Molecule , CDPL::Chem::Reaction , CDPL::Pharm::BasicPharmacophore , CDPL::Pharm::Pharmacophore
• copyParameters() : CDPL::Base::ControlParameterContainer
• copyProperties() : CDPL::Base::PropertyContainer
• create() : CDPL::Base::LookupKey , CDPL::ConfGen::CanonicalFragment
• createCairoSurface() : CDPL::Vis::ImageWriter
• createQBrush() : CDPL::Vis::QtObjectFactory
• createQColor() : CDPL::Vis::QtObjectFactory
• createQFont() : CDPL::Vis::QtObjectFactory
• createQPainterPath() : CDPL::Vis::QtObjectFactory
• createQPen() : CDPL::Vis::QtObjectFactory
• createReader() : CDPL::Base::DataInputHandler< T > , CDPL::Pharm::PSDMoleculeInputHandler , CDPL::Pharm::PSDPharmacophoreInputHandler , CDPL::Util::DefaultDataInputHandler< ReaderImpl, Format, DataType >
• createWriter() : CDPL::Base::DataOutputHandler< T > , CDPL::Pharm::PSDMolecularGraphOutputHandler , CDPL::Util::DefaultDataOutputHandler< WriterImpl, FORMAT, DataType >
• CVector() : CDPL::Math::CVector< T, N >
• CyclicSubstructure() : CDPL::Chem::CyclicSubstructure