Chemical Data Processing Library C++ API - Version 1.2.0
Class Index
A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | X | Z
A
AlignedColorTverskyScore (CDPL::Shape)
AlignedShapeTverskyScore (CDPL::Shape)
AlignedTotalOverlapTverskyScore (CDPL::Shape)
AlignedTverskyComboScore (CDPL::Shape)
AlignmentResult (CDPL::Shape)
AmideImidicAcidTautomerization (CDPL::Chem)
ANDMatchExpressionList (CDPL::Chem)
ANDMatchExpressionList< ObjType, void > (CDPL::Chem)
TorsionRule::AngleEntry (CDPL::ConfGen)
Any (CDPL::Base)
AromaticFeatureGenerator (CDPL::Pharm)
AromaticRingSet (CDPL::Chem)
AromaticSSSRSubset (CDPL::Chem)
AromaticSubstructure (CDPL::Chem)
Array (CDPL::Util)
Atom (CDPL::Chem)
Atom2DCoordinatesCalculator (CDPL::Chem)
Atom3DCoordinatesFunctor (CDPL::Chem)
AtomArray3DCoordinatesFunctor (CDPL::Chem)
AtomAutoCorrelation3DVectorCalculator (CDPL::Descr)
AtomBondMapping (CDPL::Chem)
AtomConfigurationMatchExpression (CDPL::Chem)
AtomConformer3DCoordinatesFunctor (CDPL::Chem)
AtomContainer (CDPL::Chem)
AtomDensityGridCalculator (CDPL::GRAIL)
AtomDictionary (CDPL::Chem)
AtomEnvironmentMatchExpression (CDPL::Chem)
AtomHydrophobicityCalculator (CDPL::MolProp)
AtomMapping (CDPL::Chem)
AtomRDFCodeCalculator (CDPL::Descr)
AtomSSSRRingSizeMatchExpression (CDPL::Chem)
AtomTypeMatchExpression (CDPL::Chem)
AttributedGrid (CDPL::Grid)
AutoCorrelation2DVectorCalculator (CDPL::Descr)
AutoCorrelation3DVectorCalculator (CDPL::Descr)
AutomorphismGroupSearch (CDPL::Chem)
B
BadCast (CDPL::Base)
BasicAtom (CDPL::Chem)
BasicBond (CDPL::Chem)
BasicFeature (CDPL::Pharm)
BasicMolecule (CDPL::Chem)
BasicPharmacophore (CDPL::Pharm)
BasicReaction (CDPL::Chem)
BCUTDescriptorCalculator (CDPL::Descr)
BemisMurckoAnalyzer (CDPL::Chem)
BFGSMinimizer (CDPL::Math)
BindingAffinityCalculator (CDPL::GRAIL)
Bond (CDPL::Chem)
BondConfigurationMatchExpression (CDPL::Chem)
BondContainer (CDPL::Chem)
BondDirectionMatchExpression (CDPL::Chem)
BondMapping (CDPL::Chem)
BondOrderCalculator (CDPL::Chem)
PatternBasedTautomerizationRule::BondOrderChange (CDPL::Chem)
BondReactionCenterStatusMatchExpression (CDPL::Chem)
BondStereoFlagCalculator (CDPL::Chem)
BondSubstituentDirectionMatchExpression (CDPL::Chem)
BoundedMatrix (CDPL::Math)
BoundedVector (CDPL::Math)
BRICSFragmentGenerator (CDPL::Chem)
BronKerboschAlgorithm (CDPL::Util)
Brush (CDPL::Vis)
BurdenMatrixGenerator (CDPL::Descr)
BuriednessGridCalculator (CDPL::GRAIL)
BuriednessScore (CDPL::GRAIL)
C
CairoFontMetrics (CDPL::Vis)
CairoPointer (CDPL::Vis)
CairoPointerTraits (CDPL::Vis)
CairoPointerTraits< cairo_pattern_t > (CDPL::Vis)
CairoPointerTraits< cairo_surface_t > (CDPL::Vis)
CairoPointerTraits< cairo_t > (CDPL::Vis)
CairoRenderer2D (CDPL::Vis)
CalculationFailed (CDPL::Base)
CanonicalFragment (CDPL::ConfGen)
CanonicalNumberingCalculator (CDPL::Chem)
MMCIFData::Category (CDPL::Biomol)
CationPiInteractionConstraint (CDPL::Pharm)
CationPiInteractionScore (CDPL::Pharm)
CDFDRegularGridReader (CDPL::Grid)
CDFDRegularGridSetReader (CDPL::Grid)
CDFDRegularGridSetWriter (CDPL::Grid)
CDFDRegularGridWriter (CDPL::Grid)
CDFFeatureContainerWriter (CDPL::Pharm)
CDFMolecularGraphWriter (CDPL::Chem)
CDFMoleculeReader (CDPL::Chem)
CDFPharmacophoreReader (CDPL::Pharm)
CDFReactionReader (CDPL::Chem)
CDFReactionWriter (CDPL::Chem)
StructureGridView2D::Cell (CDPL::Vis)
CFLMoleculeReader (CDPL::ConfGen)
ChEMBLStandardizer (CDPL::Chem)
CIPConfigurationLabeler (CDPL::Chem)
CIPPriorityCalculator (CDPL::Chem)
CircularFingerprintGenerator (CDPL::Descr)
ClipPathPrimitive2D (CDPL::Vis)
CMatrix (CDPL::Math)
CMLMolecularGraphWriter (CDPL::Chem)
CMLMoleculeReader (CDPL::Chem)
Color (CDPL::Vis)
ColorTable (CDPL::Vis)
ColorTanimotoScore (CDPL::Shape)
ColorTverskyScore (CDPL::Shape)
CommonConnectedSubstructureSearch (CDPL::Chem)
CommonType (CDPL::Math)
CompleteRingSet (CDPL::Chem)
ComplexTraits (CDPL::Math)
ComponentSet (CDPL::Chem)
CompoundDataReader (CDPL::Util)
CompressedDataReader (CDPL::Util)
CompressedDataWriter (CDPL::Util)
CompressedIOStream (CDPL::Util)
CompressionAlgoTraits (CDPL::Util)
CompressionAlgoTraits< BZIP2 > (CDPL::Util)
CompressionAlgoTraits< GZIP > (CDPL::Util)
CompressionOStream (CDPL::Util)
CompressionStreamBase (CDPL::Util)
ConformerData (CDPL::ConfGen)
ConformerGenerator (CDPL::ConfGen)
ConformerGeneratorSettings (CDPL::ConfGen)
ConnectedSubstructureSet (CDPL::Chem)
ControlParameterContainer (CDPL::Base)
ControlParameterList (CDPL::Base)
CrossProductMatrixFromVector (CDPL::Math)
CVector (CDPL::Math)
CyclicSubstructure (CDPL::Chem)
D
DataFormat (CDPL::Base)
DataInputHandler (CDPL::Base)
DataIOBase (CDPL::Base)
DataIOManager (CDPL::Base)
DataOutputHandler (CDPL::Base)
DataReader (CDPL::Base)
DataWriter (CDPL::Base)
DecompressionIStream (CDPL::Util)
PathFingerprintGenerator::DefAtomDescriptorFunctor (CDPL::Descr)
HashCodeCalculator::DefAtomHashSeedFunctor (CDPL::Chem)
CircularFingerprintGenerator::DefAtomIdentifierFunctor (CDPL::Descr)
ObjectPool::DefaultConstructor (CDPL::Util)
ObjectStack::DefaultConstructor (CDPL::Util)
DefaultDataInputHandler (CDPL::Util)
DefaultDataOutputHandler (CDPL::Util)
ObjectPool::DefaultDestructor (CDPL::Util)
DefaultInteractionAnalyzer (CDPL::Pharm)
DefaultMultiConfMoleculeInputProcessor (CDPL::Chem)
DefaultPharmacophoreGenerator (CDPL::Pharm)
DefaultTautomerGenerator (CDPL::Chem)
PathFingerprintGenerator::DefBondDescriptorFunctor (CDPL::Descr)
HashCodeCalculator::DefBondHashSeedFunctor (CDPL::Chem)
CircularFingerprintGenerator::DefBondIdentifierFunctor (CDPL::Descr)
Dereferencer (CDPL::Util)
DGConstraintGenerator (CDPL::ConfGen)
DGConstraintGeneratorSettings (CDPL::ConfGen)
DGCoordinatesGenerator (CDPL::Util)
DGCoordinatesGenerator< 3, T > (CDPL::Util)
DGCoordinatesGeneratorBase (CDPL::Util)
DGStructureGenerator (CDPL::ConfGen)
DGStructureGeneratorSettings (CDPL::ConfGen)
DiagonalMatrixFromVector (CDPL::Math)
DirectAssignmentProxy (CDPL::Math)
DGCoordinatesGeneratorBase::DistanceConstraint (CDPL::Util)
E
ElasticPotential (CDPL::ForceField)
ElectronSystem (CDPL::Chem)
ElectronSystemList (CDPL::Chem)
FastGaussianShapeAlignment::ShapeData::Element (CDPL::Shape)
GaussianShape::Element (CDPL::Shape)
ElementHistogram (CDPL::MolProp)
EllipsePrimitive2D (CDPL::Vis)
Entity3D (CDPL::Chem)
Entity3DContainer (CDPL::Chem)
Entity3DCoordinatesFunctor (CDPL::Chem)
Entity3DMapping (CDPL::Chem)
UFFAtomTypePropertyTable::Entry (CDPL::ForceField)
MMFF94VanDerWaalsParameterTable::Entry (CDPL::ForceField)
MMFF94TorsionParameterTable::Entry (CDPL::ForceField)
MMFF94SymbolicAtomTypePatternTable::Entry (CDPL::ForceField)
MMFF94StretchBendParameterTable::Entry (CDPL::ForceField)
MMFF94PrimaryToParameterAtomTypeMap::Entry (CDPL::ForceField)
MMFF94BondStretchingParameterTable::Entry (CDPL::ForceField)
MMFF94PartialBondChargeIncrementTable::Entry (CDPL::ForceField)
MMFF94OutOfPlaneBendingParameterTable::Entry (CDPL::ForceField)
MMFF94FormalAtomChargeDefinitionTable::Entry (CDPL::ForceField)
MMFF94DefaultStretchBendParameterTable::Entry (CDPL::ForceField)
MMFF94BondStretchingRuleParameterTable::Entry (CDPL::ForceField)
MMFF94BondChargeIncrementTable::Entry (CDPL::ForceField)
MMFF94AtomTypePropertyTable::Entry (CDPL::ForceField)
MMFF94AromaticAtomTypeDefinitionTable::Entry (CDPL::ForceField)
MMFF94AngleBendingParameterTable::Entry (CDPL::ForceField)
AtomDictionary::Entry (CDPL::Chem)
ResidueDictionary::Entry (CDPL::Biomol)
Error (CDPL::ForceField)
ExactGaussianShapeOverlapFunction (CDPL::Shape)
Exception (CDPL::Base)
FragmentGenerator::ExcludePattern (CDPL::Chem)
Expression (CDPL::Math)
ExtendedSSSR (CDPL::Chem)
F
FastGaussianShapeAlignment (CDPL::Shape)
FastGaussianShapeOverlapFunction (CDPL::Shape)
Feature (CDPL::Pharm)
FeatureAutoCorrelation3DVectorCalculator (CDPL::Descr)
FeatureContainer (CDPL::Pharm)
FeatureDistanceConstraint (CDPL::Pharm)
FeatureDistanceScore (CDPL::Pharm)
FeatureGenerator (CDPL::Pharm)
FeatureGeometryMatchFunctor (CDPL::Pharm)
FeatureInteractionScore (CDPL::Pharm)
FeatureInteractionScoreCombiner (CDPL::Pharm)
FeatureInteractionScoreGridCalculator (CDPL::GRAIL)
FeatureMapping (CDPL::Pharm)
FeaturePairDistanceMatchFunctor (CDPL::Pharm)
FeaturePositionMatchFunctor (CDPL::Pharm)
FeatureRDFCodeCalculator (CDPL::Descr)
FeatureSet (CDPL::Pharm)
FeatureTypeHistogram (CDPL::Pharm)
FeatureTypeMatchFunctor (CDPL::Pharm)
FileDataReader (CDPL::Util)
FileDataWriter (CDPL::Util)
FileRemover (CDPL::Util)
FileScreeningHitCollector (CDPL::Pharm)
Font (CDPL::Vis)
FontMetrics (CDPL::Vis)
Fragment (CDPL::Chem)
FragmentAssembler (CDPL::ConfGen)
FragmentAssemblerSettings (CDPL::ConfGen)
FragmentGenerator::FragmentationRule (CDPL::Chem)
FragmentConformerGenerator (CDPL::ConfGen)
FragmentConformerGeneratorSettings (CDPL::ConfGen)
FragmentGenerator (CDPL::Chem)
FragmentLibrary (CDPL::ConfGen)
FragmentLibraryEntry (CDPL::ConfGen)
FragmentLibraryGenerator (CDPL::ConfGen)
FragmentGenerator::FragmentLink (CDPL::Chem)
FragmentList (CDPL::Chem)
FragmentConformerGeneratorSettings::FragmentSettings (CDPL::ConfGen)
G
GaussianShape (CDPL::Shape)
GaussianShapeAlignment (CDPL::Shape)
GaussianShapeAlignmentStartGenerator (CDPL::Shape)
GaussianShapeFunction (CDPL::Shape)
GaussianShapeFunctionAlignment (CDPL::Shape)
GaussianShapeGenerator (CDPL::Shape)
GaussianShapeOverlapFunction (CDPL::Shape)
GaussianShapeSet (CDPL::Shape)
GeneralizedBellAtomDensity (CDPL::GRAIL)
GenericHydrogen13ShiftTautomerization (CDPL::Chem)
GenericHydrogen15ShiftTautomerization (CDPL::Chem)
GradientVectorTraits (CDPL::ForceField)
GradientVectorTraits< Math::VectorArray< V > > (CDPL::ForceField)
GradientVectorTraits< std::vector< V > > (CDPL::ForceField)
GRAILDataSetGenerator (CDPL::GRAIL)
GRAILDescriptorCalculator (CDPL::GRAIL)
GRAILXDescriptorCalculator (CDPL::GRAIL)
GraphicsPrimitive2D (CDPL::Vis)
CompleteRingSet::Node::GreaterCmpFunc (CDPL::Chem)
Grid (CDPL::Math)
GridBinary1 (CDPL::Math)
GridBinary1Traits (CDPL::Math)
GridBooleanBinaryFunctor (CDPL::Math)
GridContainer (CDPL::Math)
GridCoordinatesMatrixTransformTraits (CDPL::Math)
GridCoordinatesTransformTraits (CDPL::Math)
GridCoordinatesTransformTraits< BoundedMatrix< T, 4, 4 > > (CDPL::Math)
GridCoordinatesTransformTraits< CMatrix< T, 4, 4 > > (CDPL::Math)
GridElementSum (CDPL::Math)
GridEquality (CDPL::Math)
GridExpression (CDPL::Math)
GridReference (CDPL::Math)
GridScalarUnaryFunctor (CDPL::Math)
GridTemporaryTraits (CDPL::Math)
GridTemporaryTraits< const GridReference< G > > (CDPL::Math)
GridTemporaryTraits< GridReference< G > > (CDPL::Math)
GridToleranceEquality (CDPL::Math)
GridUnary (CDPL::Math)
GridUnaryTraits (CDPL::Math)
H
HashCodeCalculator (CDPL::Chem)
LookupKey::HashFunc (CDPL::Base)
HBondAcceptorAtomTyper (CDPL::MolProp)
HBondAcceptorFeatureGenerator (CDPL::Pharm)
HBondDonorAtomTyper (CDPL::MolProp)
HBondDonorFeatureGenerator (CDPL::Pharm)
HBondingInteractionConstraint (CDPL::Pharm)
HBondingInteractionScore (CDPL::Pharm)
HierarchyView (CDPL::Biomol)
HierarchyViewChain (CDPL::Biomol)
HierarchyViewFragment (CDPL::Biomol)
HierarchyViewModel (CDPL::Biomol)
HierarchyViewNode (CDPL::Biomol)
HomogenousCoordsAdapter (CDPL::Math)
Hydrogen3DCoordinatesCalculator (CDPL::Chem)
HydrophobicAtomFeatureGenerator (CDPL::Pharm)
HydrophobicFeatureGenerator (CDPL::Pharm)
HydrophobicInteractionConstraint (CDPL::Pharm)
HydrophobicInteractionScore (CDPL::Pharm)
I
IdentityMatrix (CDPL::Math)
ImageWriter (CDPL::Vis)
ImineEnamineTautomerization (CDPL::Chem)
INCHIMolecularGraphWriter (CDPL::Chem)
INCHIMoleculeReader (CDPL::Chem)
IndexedElementIterator (CDPL::Util)
IndexError (CDPL::Base)
IndirectArray (CDPL::Util)
InitListMatrix (CDPL::Math)
InitListVector (CDPL::Math)
integral_constant< bool, !(std::is_nothrow_move_constructible< T >::value &&sizeof(T)<=sizeof(Storage::stack) &&std::alignment_of< T >::value<=std::alignment_of< Storage::StackStorageT >::value)> (std)
InteractionAnalyzer (CDPL::Pharm)
InteractionConstraintConnector (CDPL::Pharm)
InteractionPharmacophoreGenerator (CDPL::Pharm)
IOError (CDPL::Base)
IonicInteractionConstraint (CDPL::Pharm)
IonicInteractionScore (CDPL::Pharm)
IsScalar (CDPL::Math)
IsScalar< std::complex< T > > (CDPL::Math)
MMCIFData::Item (CDPL::Biomol)
ItemNotFound (CDPL::Base)
J
JMEMolecularGraphWriter (CDPL::Chem)
JMEMoleculeReader (CDPL::Chem)
JMEReactionReader (CDPL::Chem)
JMEReactionWriter (CDPL::Chem)
K
KabschAlgorithm (CDPL::Math)
KekuleStructureCalculator (CDPL::Chem)
KeteneYnolTautomerization (CDPL::Chem)
KetoEnolTautomerization (CDPL::Chem)
L
LactamLactimTautomerization (CDPL::Chem)
CanonicalNumberingCalculator::AtomNode::LessCmpFunc (CDPL::Chem)
CanonicalNumberingCalculator::Edge::LessCmpFunc (CDPL::Chem)
CIPPriorityCalculator::AtomNode::LessCmpFunc (CDPL::Chem)
SmallestSetOfSmallestRings::PathMessage::LessCmpFunc (CDPL::Chem)
Line2D (CDPL::Vis)
LinePrimitive2D (CDPL::Vis)
LineSegmentListPrimitive2D (CDPL::Vis)
LogSCalculator (CDPL::MolProp)
LookupKey (CDPL::Base)
Lower (CDPL::Math)
M
MACCSFingerprintGenerator (CDPL::Descr)
Map (CDPL::Util)
MapDefaultValue (CDPL::Util)
MapDefaultValue< ValueType, false > (CDPL::Util)
MassComposition (CDPL::MolProp)
MatchConstraint (CDPL::Chem)
MatchConstraintList (CDPL::Chem)
MatchExpression (CDPL::Chem)
MatchExpression< ObjType, void > (CDPL::Chem)
MatchExpressionList (CDPL::Chem)
Matrix (CDPL::Math)
Matrix1VectorBinary (CDPL::Math)
Matrix1VectorBinaryTraits (CDPL::Math)
Matrix2VectorBinary (CDPL::Math)
Matrix2VectorBinaryTraits (CDPL::Math)
MatrixBinary1 (CDPL::Math)
MatrixBinary1Traits (CDPL::Math)
MatrixBinary2 (CDPL::Math)
MatrixBinary2Traits (CDPL::Math)
MatrixBinaryFunctor (CDPL::Math)
MatrixBooleanBinaryFunctor (CDPL::Math)
MatrixColumn (CDPL::Math)
MatrixContainer (CDPL::Math)
MatrixElementSum (CDPL::Math)
MatrixEquality (CDPL::Math)
MatrixExpression (CDPL::Math)
MatrixNorm1 (CDPL::Math)
MatrixNormFrobenius (CDPL::Math)
MatrixNormInfinity (CDPL::Math)
MatrixProduct (CDPL::Math)
MatrixRange (CDPL::Math)
MatrixReference (CDPL::Math)
MatrixRow (CDPL::Math)
MatrixScalarRealUnaryFunctor (CDPL::Math)
MatrixScalarUnaryFunctor (CDPL::Math)
MatrixSlice (CDPL::Math)
MatrixTemporaryTraits (CDPL::Math)
MatrixTemporaryTraits< const MatrixColumn< M > > (CDPL::Math)
MatrixTemporaryTraits< const MatrixRange< M > > (CDPL::Math)
MatrixTemporaryTraits< const MatrixReference< M > > (CDPL::Math)
MatrixTemporaryTraits< const MatrixRow< M > > (CDPL::Math)
MatrixTemporaryTraits< const MatrixSlice< M > > (CDPL::Math)
MatrixTemporaryTraits< const MatrixTranspose< M > > (CDPL::Math)
MatrixTemporaryTraits< const TriangularAdapter< M, Tri > > (CDPL::Math)
MatrixTemporaryTraits< MatrixColumn< M > > (CDPL::Math)
MatrixTemporaryTraits< MatrixRange< M > > (CDPL::Math)
MatrixTemporaryTraits< MatrixReference< M > > (CDPL::Math)
MatrixTemporaryTraits< MatrixRow< M > > (CDPL::Math)
MatrixTemporaryTraits< MatrixSlice< M > > (CDPL::Math)
MatrixTemporaryTraits< MatrixTranspose< M > > (CDPL::Math)
MatrixTemporaryTraits< TriangularAdapter< M, Tri > > (CDPL::Math)
MatrixToleranceEquality (CDPL::Math)
MatrixTrace (CDPL::Math)
MatrixTranspose (CDPL::Math)
MatrixUnary (CDPL::Math)
MatrixUnaryTraits (CDPL::Math)
MatrixVectorBinaryFunctor (CDPL::Math)
MatrixVectorProduct (CDPL::Math)
MaxCommonAtomSubstructureSearch (CDPL::Chem)
MaxCommonBondSubstructureSearch (CDPL::Chem)
FeatureInteractionScoreGridCalculator::MaxScoreFunctor (CDPL::GRAIL)
MHMOPiChargeCalculator (CDPL::MolProp)
MinimizerVariableArrayTraits (CDPL::Math)
MinimizerVariableArrayTraits< std::vector< V > > (CDPL::Math)
MinimizerVariableArrayTraits< VectorArray< V > > (CDPL::Math)
MLRModel (CDPL::Math)
MMCIFData (CDPL::Biomol)
MMCIFMolecularGraphWriter (CDPL::Biomol)
MMCIFMoleculeReader (CDPL::Biomol)
MMFF94AngleBendingInteraction (CDPL::ForceField)
MMFF94AngleBendingInteractionParameterizer (CDPL::ForceField)
MMFF94AngleBendingParameterTable (CDPL::ForceField)
MMFF94AromaticAtomTypeDefinitionTable (CDPL::ForceField)
MMFF94AromaticSSSRSubset (CDPL::ForceField)
MMFF94AtomTypePropertyTable (CDPL::ForceField)
MMFF94AtomTyper (CDPL::ForceField)
MMFF94BondChargeIncrementTable (CDPL::ForceField)
MMFF94BondStretchingInteraction (CDPL::ForceField)
MMFF94BondStretchingInteractionParameterizer (CDPL::ForceField)
MMFF94BondStretchingParameterTable (CDPL::ForceField)
MMFF94BondStretchingRuleParameterTable (CDPL::ForceField)
MMFF94BondTyper (CDPL::ForceField)
MMFF94ChargeCalculator (CDPL::ForceField)
MMFF94DefaultStretchBendParameterTable (CDPL::ForceField)
MMFF94ElectrostaticInteraction (CDPL::ForceField)
MMFF94ElectrostaticInteractionParameterizer (CDPL::ForceField)
MMFF94EnergyCalculator (CDPL::ForceField)
MMFF94FormalAtomChargeDefinitionTable (CDPL::ForceField)
MMFF94GradientCalculator (CDPL::ForceField)
MMFF94HeavyToHydrogenAtomTypeMap (CDPL::ForceField)
MMFF94InteractionData (CDPL::ForceField)
MMFF94InteractionParameterizer (CDPL::ForceField)
MMFF94OutOfPlaneBendingInteraction (CDPL::ForceField)
MMFF94OutOfPlaneBendingInteractionParameterizer (CDPL::ForceField)
MMFF94OutOfPlaneBendingParameterTable (CDPL::ForceField)
MMFF94PartialBondChargeIncrementTable (CDPL::ForceField)
MMFF94PrimaryToParameterAtomTypeMap (CDPL::ForceField)
MMFF94StretchBendInteraction (CDPL::ForceField)
MMFF94StretchBendInteractionParameterizer (CDPL::ForceField)
MMFF94StretchBendParameterTable (CDPL::ForceField)
MMFF94SymbolicAtomTypePatternTable (CDPL::ForceField)
MMFF94SymbolicToNumericAtomTypeMap (CDPL::ForceField)
MMFF94TorsionInteraction (CDPL::ForceField)
MMFF94TorsionInteractionParameterizer (CDPL::ForceField)
MMFF94TorsionParameterTable (CDPL::ForceField)
MMFF94VanDerWaalsInteraction (CDPL::ForceField)
MMFF94VanDerWaalsInteractionParameterizer (CDPL::ForceField)
MMFF94VanDerWaalsParameterTable (CDPL::ForceField)
MMTFMolecularGraphWriter (CDPL::Biomol)
MMTFMoleculeReader (CDPL::Biomol)
MOL2MolecularGraphWriter (CDPL::Chem)
MOL2MoleculeReader (CDPL::Chem)
MolecularComplexityCalculator (CDPL::Descr)
MolecularGraph (CDPL::Chem)
MolecularGraphComponentGroupingMatchExpression (CDPL::Chem)
Molecule (CDPL::Chem)
MoleculeAutoCorr2DDescriptorCalculator (CDPL::Descr)
MoleculeAutoCorr3DDescriptorCalculator (CDPL::Descr)
MoleculeRDFDescriptorCalculator (CDPL::Descr)
MOLMolecularGraphWriter (CDPL::Chem)
MOLMoleculeReader (CDPL::Chem)
MorganNumberingCalculator (CDPL::Chem)
MultiConfMoleculeInputProcessor (CDPL::Chem)
MultiFormatDataReader (CDPL::Util)
MultiFormatDataWriter (CDPL::Util)
MultiMap (CDPL::Util)
MultiMapDefaultValue (CDPL::Util)
MultiMapDefaultValue< ValueType, false > (CDPL::Util)
MultiSubstructureSearch (CDPL::Chem)
N
NegIonizableFeatureGenerator (CDPL::Pharm)
NitroAciTautomerization (CDPL::Chem)
NitrosoOximeTautomerization (CDPL::Chem)
Atom2DCoordinatesCalculator::LGNode::NodeLayoutInfo (CDPL::Chem)
NOTMatchExpression (CDPL::Chem)
NOTMatchExpression< ObjType, void > (CDPL::Chem)
NPoint2DPharmacophoreFingerprintGenerator (CDPL::Descr)
NPoint3DPharmacophoreFingerprintGenerator (CDPL::Descr)
NPointPharmacophoreFingerprintGenerator (CDPL::Descr)
NullCheckDereferencer (CDPL::Util)
NullPointerException (CDPL::Base)
O
ObjectPool (CDPL::Util)
ObjectStack (CDPL::Util)
OperationFailed (CDPL::Base)
ORMatchExpressionList (CDPL::Chem)
ORMatchExpressionList< ObjType, void > (CDPL::Chem)
OrthogonalPiPiInteractionConstraint (CDPL::Pharm)
OrthogonalPiPiInteractionScore (CDPL::Pharm)
P
ParallelPiPiInteractionConstraint (CDPL::Pharm)
ParallelPiPiInteractionScore (CDPL::Pharm)
ParameterizationFailed (CDPL::ForceField)
Path2D (CDPL::Vis)
Path2DConverter (CDPL::Vis)
PathFingerprintGenerator (CDPL::Descr)
PathPrimitive2D (CDPL::Vis)
PatternAtomTyper::Pattern (CDPL::Chem)
SubstructureHistogramCalculator::Pattern (CDPL::Chem)
PatternAtomTyper (CDPL::Chem)
PatternBasedFeatureGenerator (CDPL::Pharm)
PatternBasedTautomerizationRule (CDPL::Chem)
PDBData (CDPL::Biomol)
PDBMolecularGraphWriter (CDPL::Biomol)
PDBMoleculeReader (CDPL::Biomol)
PDFMolecularGraphWriter (CDPL::Vis)
PDFReactionWriter (CDPL::Vis)
Pen (CDPL::Vis)
PEOESigmaChargeCalculator (CDPL::MolProp)
Pharmacophore (CDPL::Pharm)
PharmacophoreAlignment (CDPL::Pharm)
PharmacophoreAutoCorr3DDescriptorCalculator (CDPL::Descr)
PharmacophoreFitScore (CDPL::Pharm)
PharmacophoreFitScreeningScore (CDPL::Pharm)
PharmacophoreGenerator (CDPL::Pharm)
PharmacophoreRDFDescriptorCalculator (CDPL::Descr)
PhosphinicAcidTautomerization (CDPL::Chem)
PiElectronSystemList (CDPL::Chem)
PMLFeatureContainerWriter (CDPL::Pharm)
PMLPharmacophoreReader (CDPL::Pharm)
PNGMolecularGraphWriter (CDPL::Vis)
PNGReactionWriter (CDPL::Vis)
PointArray2D (CDPL::Vis)
PointListPrimitive2D (CDPL::Vis)
PolygonPrimitive2D (CDPL::Vis)
PolylinePrimitive2D (CDPL::Vis)
PosIonizableFeatureGenerator (CDPL::Pharm)
PrincipalAxesAlignmentStartGenerator (CDPL::Shape)
CIPPriorityCalculator::AtomNode::PriorityGreaterCmpFunc (CDPL::Chem)
CIPPriorityCalculator::AtomNode::PriorityLessCmpFunc (CDPL::Chem)
PropertyContainer (CDPL::Base)
PropertyMatchExpression (CDPL::Chem)
PropertyMatchExpression< ValueType, MatchFunc, ObjType, void > (CDPL::Chem)
PropertyValue (CDPL::Util)
PropertyValueProduct (CDPL::Util)
ProtonationStateStandardizer (CDPL::Chem)
PSDMolecularGraphOutputHandler (CDPL::Pharm)
PSDMolecularGraphWriter (CDPL::Pharm)
PSDMoleculeInputHandler (CDPL::Pharm)
PSDMoleculeReader (CDPL::Pharm)
PSDPharmacophoreInputHandler (CDPL::Pharm)
PSDPharmacophoreReader (CDPL::Pharm)
PSDScreeningDBAccessor (CDPL::Pharm)
PSDScreeningDBCreator (CDPL::Pharm)
PSMolecularGraphWriter (CDPL::Vis)
PSReactionWriter (CDPL::Vis)
PubChemFingerprintGenerator (CDPL::Descr)
Q
QtFontMetrics (CDPL::Vis)
QtObjectFactory (CDPL::Vis)
QtRenderer2D (CDPL::Vis)
Quaternion (CDPL::Math)
QuaternionBinary1 (CDPL::Math)
QuaternionBinary1Traits (CDPL::Math)
QuaternionBinary2 (CDPL::Math)
QuaternionBinary2Traits (CDPL::Math)
QuaternionBinaryFunctor (CDPL::Math)
QuaternionBooleanBinaryFunctor (CDPL::Math)
QuaternionConjugate (CDPL::Math)
QuaternionContainer (CDPL::Math)
QuaternionDivision (CDPL::Math)
QuaternionElementSum (CDPL::Math)
QuaternionEquality (CDPL::Math)
QuaternionExpression (CDPL::Math)
QuaternionInverse (CDPL::Math)
QuaternionNorm (CDPL::Math)
QuaternionNorm2 (CDPL::Math)
QuaternionProduct (CDPL::Math)
QuaternionReference (CDPL::Math)
QuaternionScalarRealUnaryFunctor (CDPL::Math)
QuaternionScalarUnaryFunctor (CDPL::Math)
QuaternionTemporaryTraits (CDPL::Math)
QuaternionTemporaryTraits< const QuaternionReference< Q > > (CDPL::Math)
QuaternionTemporaryTraits< const VectorQuaternionAdapter< V > > (CDPL::Math)
QuaternionTemporaryTraits< QuaternionReference< Q > > (CDPL::Math)
QuaternionTemporaryTraits< VectorQuaternionAdapter< V > > (CDPL::Math)
QuaternionToleranceEquality (CDPL::Math)
QuaternionUnary1 (CDPL::Math)
QuaternionUnary1Traits (CDPL::Math)
QuaternionUnary2 (CDPL::Math)
QuaternionUnary2Traits (CDPL::Math)
QuaternionUnaryFunctor (CDPL::Math)
QuaternionUnreal (CDPL::Math)
QuaternionVectorAdapter (CDPL::Math)
QuaternionVectorBinary (CDPL::Math)
QuaternionVectorBinaryFunctor (CDPL::Math)
QuaternionVectorBinaryTraits (CDPL::Math)
QuaternionVectorRotation (CDPL::Math)
R
Range (CDPL::Math)
RangeError (CDPL::Base)
RDFCodeCalculator (CDPL::Descr)
RDFReactionReader (CDPL::Chem)
RDFReactionWriter (CDPL::Chem)
Reaction (CDPL::Chem)
ReactionAtomMappingMatchExpression (CDPL::Chem)
ReactionComponentGroupingMatchExpression (CDPL::Chem)
ReactionSubstructureSearch (CDPL::Chem)
ReactionView2D (CDPL::Vis)
Reactor (CDPL::Chem)
RealQuaternion (CDPL::Math)
RECAPFragmentGenerator (CDPL::Chem)
Rectangle2D (CDPL::Vis)
ReferenceColorTverskyScore (CDPL::Shape)
ReferenceShapeTverskyScore (CDPL::Shape)
ReferenceTotalOverlapTverskyScore (CDPL::Shape)
ReferenceTverskyComboScore (CDPL::Shape)
RegularGrid (CDPL::Grid)
RegularGridSet (CDPL::Grid)
RegularSpatialGrid (CDPL::Math)
Renderer2D (CDPL::Vis)
ResidueDictionary (CDPL::Biomol)
ResidueList (CDPL::Biomol)
ResonanceStructureGenerator (CDPL::Chem)
GaussianShapeFunctionAlignment::Result (CDPL::Shape)
RMSDConformerSelector (CDPL::ConfGen)
RotationMatrix (CDPL::Math)
RXNReactionReader (CDPL::Chem)
RXNReactionWriter (CDPL::Chem)
S
Scalar13QuaternionTernary (CDPL::Math)
Scalar13QuaternionTernaryFunctor (CDPL::Math)
Scalar13QuaternionTernaryTraits (CDPL::Math)
Scalar1GridBinary (CDPL::Math)
Scalar1GridBinaryTraits (CDPL::Math)
Scalar1MatrixBinary (CDPL::Math)
Scalar1MatrixBinaryTraits (CDPL::Math)
Scalar1QuaternionAddition (CDPL::Math)
Scalar1QuaternionBinary1 (CDPL::Math)
Scalar1QuaternionBinary1Traits (CDPL::Math)
Scalar1QuaternionBinary2 (CDPL::Math)
Scalar1QuaternionBinary2Traits (CDPL::Math)
Scalar1QuaternionBinaryFunctor (CDPL::Math)
Scalar1QuaternionSubtraction (CDPL::Math)
Scalar1VectorBinary (CDPL::Math)
Scalar1VectorBinaryTraits (CDPL::Math)
Scalar2GridBinary (CDPL::Math)
Scalar2GridBinaryTraits (CDPL::Math)
Scalar2MatrixBinary (CDPL::Math)
Scalar2MatrixBinaryTraits (CDPL::Math)
Scalar2QuaternionAddition (CDPL::Math)
Scalar2QuaternionBinary1 (CDPL::Math)
Scalar2QuaternionBinary1Traits (CDPL::Math)
Scalar2QuaternionBinary2 (CDPL::Math)
Scalar2QuaternionBinary2Traits (CDPL::Math)
Scalar2QuaternionBinaryFunctor (CDPL::Math)
Scalar2QuaternionSubtraction (CDPL::Math)
Scalar2VectorBinary (CDPL::Math)
Scalar2VectorBinaryTraits (CDPL::Math)
Scalar3GridBooleanTernaryFunctor (CDPL::Math)
Scalar3MatrixBooleanTernaryFunctor (CDPL::Math)
Scalar3QuaternionBooleanTernaryFunctor (CDPL::Math)
Scalar3QuaternionTernary (CDPL::Math)
Scalar3QuaternionTernaryFunctor (CDPL::Math)
Scalar3QuaternionTernaryTraits (CDPL::Math)
Scalar3VectorBooleanTernaryFunctor (CDPL::Math)
ScalarAbsImpl (CDPL::Math)
ScalarAbsImpl< false > (CDPL::Math)
ScalarAddition (CDPL::Math)
ScalarAdditionAssignment (CDPL::Math)
ScalarAssignment (CDPL::Math)
ScalarBinaryAssignmentFunctor (CDPL::Math)
ScalarBinaryFunctor (CDPL::Math)
ScalarConjugation (CDPL::Math)
ScalarDivision (CDPL::Math)
ScalarDivisionAssignment (CDPL::Math)
ScalarGrid (CDPL::Math)
ScalarImaginary (CDPL::Math)
ScalarMatrix (CDPL::Math)
ScalarMultiplication (CDPL::Math)
ScalarMultiplicationAssignment (CDPL::Math)
ScalarNegation (CDPL::Math)
ScalarQuaternionDivision (CDPL::Math)
ScalarReal (CDPL::Math)
ScalarRealUnaryFunctor (CDPL::Math)
ScalarSubtraction (CDPL::Math)
ScalarSubtractionAssignment (CDPL::Math)
ScalarTraits (CDPL::Math)
ScalarUnaryFunctor (CDPL::Math)
ScalarVector (CDPL::Math)
ScalingMatrix (CDPL::Math)
FeatureInteractionScoreGridCalculator::ScoreSumFunctor (CDPL::GRAIL)
ScreeningDBAccessor (CDPL::Pharm)
ScreeningDBCreator (CDPL::Pharm)
ScreeningProcessor (CDPL::Pharm)
ScreeningProcessor (CDPL::Shape)
ScreeningSettings (CDPL::Shape)
SDFMolecularGraphWriter (CDPL::Chem)
SDFMoleculeReader (CDPL::Chem)
ScreeningProcessor::SearchHit (CDPL::Pharm)
ShapeTanimotoScore (CDPL::Shape)
ShapeTverskyScore (CDPL::Shape)
SizeError (CDPL::Base)
SizeSpecification (CDPL::Vis)
Slice (CDPL::Math)
SmallestSetOfSmallestRings (CDPL::Chem)
SMARTSMolecularGraphWriter (CDPL::Chem)
SMARTSMoleculeReader (CDPL::Chem)
SMARTSReactionReader (CDPL::Chem)
SMARTSReactionWriter (CDPL::Chem)
SMILESMolecularGraphWriter (CDPL::Chem)
SMILESMoleculeReader (CDPL::Chem)
SMILESReactionReader (CDPL::Chem)
SMILESReactionWriter (CDPL::Chem)
SparseContainerElement (CDPL::Math)
SparseMatrix (CDPL::Math)
SparseVector (CDPL::Math)
SpatialEntityAlignment (CDPL::Chem)
SpatialFeatureMapping (CDPL::Pharm)
SpatialGrid (CDPL::Grid)
StereoDescriptor (CDPL::Chem)
StereoisomerGenerator (CDPL::Chem)
StreamDataReader (CDPL::Util)
StringDataBlock (CDPL::Chem)
StringDataBlockEntry (CDPL::Chem)
ResonanceStructureGenerator::StructureData (CDPL::Chem)
StructureGenerator (CDPL::ConfGen)
StructureGeneratorSettings (CDPL::ConfGen)
StructureGridView2D (CDPL::Vis)
StructureView2D (CDPL::Vis)
SubstructureHistogramCalculator (CDPL::Chem)
SubstructureSearch (CDPL::Chem)
SulfenicAcidTautomerization (CDPL::Chem)
SurfaceAtomExtractor (CDPL::Chem)
SVGMolecularGraphWriter (CDPL::Vis)
SVGReactionWriter (CDPL::Vis)
SymmetryClassCalculator::AtomNode::SVMNumberCmpFunc (CDPL::Chem)
SymmetryClassCalculator::AtomNode::SymClassCmpFunc (CDPL::Chem)
SymmetryClassCalculator (CDPL::Chem)
T
TanimotoComboScore (CDPL::Shape)
TautomerGenerator (CDPL::Chem)
TautomerizationRule (CDPL::Chem)
TautomerScore (CDPL::Chem)
TextBlockPrimitive2D (CDPL::Vis)
TextLabelPrimitive2D (CDPL::Vis)
TopologicalEntityAlignment (CDPL::Chem)
TorsionCategory (CDPL::ConfGen)
TorsionDriver (CDPL::ConfGen)
TorsionDriverSettings (CDPL::ConfGen)
TorsionLibrary (CDPL::ConfGen)
TorsionRule (CDPL::ConfGen)
TorsionRuleMatch (CDPL::ConfGen)
TorsionRuleMatcher (CDPL::ConfGen)
TotalOverlapTanimotoScore (CDPL::Shape)
TotalOverlapTverskyScore (CDPL::Shape)
TPSACalculator (CDPL::MolProp)
TranslationMatrix (CDPL::Math)
TriangularAdapter (CDPL::Math)
TverskyComboScore (CDPL::Shape)
TypeTraits (CDPL::Math)
TypeTraits< SparseContainerElement< C > > (CDPL::Math)
TypeTraits< std::complex< T > > (CDPL::Math)
U
UFFAtomTypePropertyTable (CDPL::ForceField)
UnitLower (CDPL::Math)
UnitUpper (CDPL::Math)
UnitVector (CDPL::Math)
Upper (CDPL::Math)
V
ValueError (CDPL::Base)
Vector (CDPL::Math)
VectorAngleCosine (CDPL::Math)
VectorArray (CDPL::Math)
VectorArrayAlignmentCalculator (CDPL::Math)
VectorBinary1 (CDPL::Math)
VectorBinary1Traits (CDPL::Math)
VectorBinary2 (CDPL::Math)
VectorBinary2Traits (CDPL::Math)
VectorBinaryFunctor (CDPL::Math)
VectorBooleanBinaryFunctor (CDPL::Math)
VectorContainer (CDPL::Math)
VectorCrossProduct (CDPL::Math)
VectorElementAccessor (CDPL::Math)
VectorElementAccessor< const E > (CDPL::Math)
VectorElementSum (CDPL::Math)
VectorEquality (CDPL::Math)
VectorExpression (CDPL::Math)
VectorInnerProduct (CDPL::Math)
VectorIteratorTraits (CDPL::Math)
VectorIteratorTraits< const E > (CDPL::Math)
VectorMatrixBinary (CDPL::Math)
VectorMatrixBinaryTraits (CDPL::Math)
VectorMatrixProduct (CDPL::Math)
VectorMatrixUnary (CDPL::Math)
VectorMatrixUnaryFunctor (CDPL::Math)
VectorMatrixUnaryTraits (CDPL::Math)
VectorNorm1 (CDPL::Math)
VectorNorm2 (CDPL::Math)
VectorNormInfinity (CDPL::Math)
VectorNormInfinityIndex (CDPL::Math)
VectorQuaternionAdapter (CDPL::Math)
VectorRange (CDPL::Math)
VectorReference (CDPL::Math)
VectorScalarBinaryFunctor (CDPL::Math)
VectorScalarIndexUnaryFunctor (CDPL::Math)
VectorScalarRealUnaryFunctor (CDPL::Math)
VectorScalarUnaryFunctor (CDPL::Math)
VectorSlice (CDPL::Math)
VectorTemporaryTraits (CDPL::Math)
VectorTemporaryTraits< const HomogenousCoordsAdapter< V > > (CDPL::Math)
VectorTemporaryTraits< const MatrixColumn< M > > (CDPL::Math)
VectorTemporaryTraits< const MatrixRange< M > > (CDPL::Math)
VectorTemporaryTraits< const MatrixReference< M > > (CDPL::Math)
VectorTemporaryTraits< const MatrixRow< M > > (CDPL::Math)
VectorTemporaryTraits< const MatrixSlice< M > > (CDPL::Math)
VectorTemporaryTraits< const MatrixTranspose< M > > (CDPL::Math)
VectorTemporaryTraits< const QuaternionVectorAdapter< Q > > (CDPL::Math)
VectorTemporaryTraits< const TriangularAdapter< M, Tri > > (CDPL::Math)
VectorTemporaryTraits< const VectorRange< V > > (CDPL::Math)
VectorTemporaryTraits< const VectorReference< V > > (CDPL::Math)
VectorTemporaryTraits< const VectorSlice< V > > (CDPL::Math)
VectorTemporaryTraits< HomogenousCoordsAdapter< V > > (CDPL::Math)
VectorTemporaryTraits< MatrixColumn< M > > (CDPL::Math)
VectorTemporaryTraits< MatrixRange< M > > (CDPL::Math)
VectorTemporaryTraits< MatrixReference< M > > (CDPL::Math)
VectorTemporaryTraits< MatrixRow< M > > (CDPL::Math)
VectorTemporaryTraits< MatrixSlice< M > > (CDPL::Math)
VectorTemporaryTraits< MatrixTranspose< M > > (CDPL::Math)
VectorTemporaryTraits< QuaternionVectorAdapter< Q > > (CDPL::Math)
VectorTemporaryTraits< TriangularAdapter< M, Tri > > (CDPL::Math)
VectorTemporaryTraits< VectorRange< V > > (CDPL::Math)
VectorTemporaryTraits< VectorReference< V > > (CDPL::Math)
VectorTemporaryTraits< VectorSlice< V > > (CDPL::Math)
VectorToleranceEquality (CDPL::Math)
VectorUnary (CDPL::Math)
VectorUnaryTraits (CDPL::Math)
View2D (CDPL::Vis)
DGCoordinatesGenerator< 3, T >::VolumeConstraint (CDPL::Util)
X
XBondAcceptorFeatureGenerator (CDPL::Pharm)
XBondDonorFeatureGenerator (CDPL::Pharm)
XBondingInteractionConstraint (CDPL::Pharm)
XBondingInteractionScore (CDPL::Pharm)
XLogPCalculator (CDPL::MolProp)
XYZMolecularGraphWriter (CDPL::Chem)
XYZMoleculeReader (CDPL::Chem)
Z
ZeroGrid (CDPL::Math)
ZeroMatrix (CDPL::Math)
ZeroVector (CDPL::Math)