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  • Introduction
  • Installation
  • Applications
  • CDPL Python Tutorial
  • CDPL Python Cookbook
    • 1. Processing of Chemical Data
      • 1.1. Molecules
        • 1.1.1. Input and Output
        • 1.1.2. Fragmentation and Extraction of Substructures
        • 1.1.3. Structure Standardization, Curation and Database Preparation
        • 1.1.4. Substructure Search
    • 2. Pharmacophore Generation and Processing
    • 3. Calculation of Molecule, Atom and Bond Properties
    • 4. Calculation of Molecule and Pharmacophore Descriptors
    • 5. 3D Structure and Conformer Generation
    • 6. Force Field Calculations
  • CDPL API Documentation
  • Release Notes
  • Acknowledgements
  • Bibliography
  • Index
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  • 1. Processing of Chemical Data »
  • 1.1. Molecules »
  • 1.1.3. Structure Standardization, Curation and Database Preparation
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1.1.3. Structure Standardization, Curation and Database Preparation

  • 1.1.3.1. ChEMBL Structure Curation Pipeline
  • 1.1.3.2. Generating Protonation States at Physiological pH
  • 1.1.3.3. Database Cleaning
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