Class Index

a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | x

a	ElasticPotential (CDPL.ForceField)	MMFF94OutOfPlaneBendingInteractionList (CDPL.ForceField)
	ElasticPotentialList (CDPL.ForceField)	MMFF94OutOfPlaneBendingInteractionParameterizer (CDPL.ForceField)
Any (CDPL.Base)	Error (CDPL.ForceField)	MMFF94OutOfPlaneBendingParameterTable (CDPL.ForceField)
AtomProperty (CDPL.Biomol)	MMFF94AngleBendingParameterTable.Entry (CDPL.ForceField)	MMFF94ParameterSet (CDPL.ForceField)
AtomPropertyDefault (CDPL.Biomol)	MMFF94AromaticAtomTypeDefinitionTable.Entry (CDPL.ForceField)	MMFF94PartialBondChargeIncrementTable (CDPL.ForceField)
AtomPropertyFlag (CDPL.Biomol)	MMFF94AtomTypePropertyTable.Entry (CDPL.ForceField)	MMFF94PrimaryToParameterAtomTypeMap (CDPL.ForceField)
AmideImidicAcidTautomerization (CDPL.Chem)	MMFF94BondChargeIncrementTable.Entry (CDPL.ForceField)	MMFF94RingSetFunction (CDPL.ForceField)
ANDAtomMatchExpressionList (CDPL.Chem)	MMFF94BondStretchingParameterTable.Entry (CDPL.ForceField)	MMFF94StretchBendInteraction (CDPL.ForceField)
ANDBondMatchExpressionList (CDPL.Chem)	MMFF94BondStretchingRuleParameterTable.Entry (CDPL.ForceField)	MMFF94StretchBendInteractionList (CDPL.ForceField)
ANDMolecularGraphMatchExpressionList (CDPL.Chem)	MMFF94DefaultStretchBendParameterTable.Entry (CDPL.ForceField)	MMFF94StretchBendInteractionParameterizer (CDPL.ForceField)
ANDReactionMatchExpressionList (CDPL.Chem)	MMFF94FormalAtomChargeDefinitionTable.Entry (CDPL.ForceField)	MMFF94StretchBendParameterTable (CDPL.ForceField)
AromaticRingSet (CDPL.Chem)	MMFF94HeavyToHydrogenAtomTypeMap.Entry (CDPL.ForceField)	MMFF94SymbolicAtomTypeFunction (CDPL.ForceField)
AromaticSSSRSubset (CDPL.Chem)	MMFF94OutOfPlaneBendingParameterTable.Entry (CDPL.ForceField)	MMFF94SymbolicAtomTypePatternTable (CDPL.ForceField)
AromaticSubstructure (CDPL.Chem)	MMFF94PartialBondChargeIncrementTable.Entry (CDPL.ForceField)	MMFF94SymbolicToNumericAtomTypeMap (CDPL.ForceField)
Atom (CDPL.Chem)	MMFF94PrimaryToParameterAtomTypeMap.Entry (CDPL.ForceField)	MMFF94TorsionInteraction (CDPL.ForceField)
Atom2DCoordinatesCalculator (CDPL.Chem)	MMFF94StretchBendParameterTable.Entry (CDPL.ForceField)	MMFF94TorsionInteractionList (CDPL.ForceField)
Atom3DCoordinatesFunction (CDPL.Chem)	MMFF94SymbolicAtomTypePatternTable.Entry (CDPL.ForceField)	MMFF94TorsionInteractionParameterizer (CDPL.ForceField)
Atom3DCoordinatesFunctor (CDPL.Chem)	MMFF94SymbolicToNumericAtomTypeMap.Entry (CDPL.ForceField)	MMFF94TorsionParameterTable (CDPL.ForceField)
Atom.AtomSequence (CDPL.Chem)	MMFF94TorsionParameterTable.Entry (CDPL.ForceField)	MMFF94VanDerWaalsAtomParameters (CDPL.ForceField)
AtomArray3DCoordinatesFunctor (CDPL.Chem)	MMFF94VanDerWaalsParameterTable.Entry (CDPL.ForceField)	MMFF94VanDerWaalsInteraction (CDPL.ForceField)
AtomBondMapping (CDPL.Chem)	UFFAtomTypePropertyTable.Entry (CDPL.ForceField)	MMFF94VanDerWaalsInteractionList (CDPL.ForceField)
AtomConfiguration (CDPL.Chem)	GRAILDescriptorCalculator.ElementIndex (CDPL.GRAIL)	MMFF94VanDerWaalsInteractionParameterizer (CDPL.ForceField)
AtomConfigurationMatchExpression (CDPL.Chem)	GRAILXDescriptorCalculator.ElementIndex (CDPL.GRAIL)	MMFF94VanDerWaalsParameterTable (CDPL.ForceField)
AtomConformer3DCoordinatesFunctor (CDPL.Chem)	ElementHistogram (CDPL.MolProp)	MolecularGraphProperty (CDPL.ForceField)
AtomContainer (CDPL.Chem)	ExactGaussianShapeOverlapFunction (CDPL.Shape)	FeatureInteractionScoreGridCalculator.MaxScoreFunctor (CDPL.GRAIL)
AtomDictionary (CDPL.Chem)	GaussianShape.Element (CDPL.Shape)	Matrix2D (CDPL.Math)
AtomEnvironmentMatchExpression (CDPL.Chem)	EllipsePrimitive2D (CDPL.Vis)	Matrix2F (CDPL.Math)
AtomMapping (CDPL.Chem)	f	Matrix2L (CDPL.Math)
AtomMatchConstraint (CDPL.Chem)		Matrix2UL (CDPL.Math)
AtomMatchExpression (CDPL.Chem)	DataFormat.FileExtensionSequence (CDPL.Base)	Matrix3D (CDPL.Math)
AtomMatchExpressionList (CDPL.Chem)	FileIOStream (CDPL.Base)	Matrix3F (CDPL.Math)
AtomMatchExpressionPtrAtomFunctor (CDPL.Chem)	FileMMTFBZ2MolecularGraphWriter (CDPL.Biomol)	Matrix3L (CDPL.Math)
AtomPredicate (CDPL.Chem)	FileMMTFBZ2MoleculeReader (CDPL.Biomol)	Matrix3UL (CDPL.Math)
AtomProperty (CDPL.Chem)	FileMMTFGZMolecularGraphWriter (CDPL.Biomol)	Matrix4D (CDPL.Math)
AtomPropertyDefault (CDPL.Chem)	FileMMTFGZMoleculeReader (CDPL.Biomol)	Matrix4F (CDPL.Math)
AtomPropertyFlag (CDPL.Chem)	FileMMTFMolecularGraphWriter (CDPL.Biomol)	Matrix4L (CDPL.Math)
AtomType (CDPL.Chem)	FileMMTFMoleculeReader (CDPL.Biomol)	Matrix4UL (CDPL.Math)
AtomTypeMatchExpression (CDPL.Chem)	FilePDBBZ2MolecularGraphWriter (CDPL.Biomol)	MassComposition (CDPL.MolProp)
AutomorphismGroupSearch (CDPL.Chem)	FilePDBBZ2MoleculeReader (CDPL.Biomol)	MHMOPiChargeCalculator (CDPL.MolProp)
Bond.AtomSequence (CDPL.Chem)	FilePDBGZMolecularGraphWriter (CDPL.Biomol)	ScreeningDBCreator.Mode (CDPL.Pharm)
Fragment.AtomSequence (CDPL.Chem)	FilePDBGZMoleculeReader (CDPL.Biomol)	MolecularGraphProperty (CDPL.Vis)
MolecularGraph.AtomSequence (CDPL.Chem)	FilePDBMolecularGraphWriter (CDPL.Biomol)	MolecularGraphPropertyDefault (CDPL.Vis)
Molecule.AtomSequence (CDPL.Chem)	FilePDBMoleculeReader (CDPL.Biomol)	n
CanonicalFragment.AtomMapping (CDPL.ConfGen)	FileCDFBZ2MolecularGraphWriter (CDPL.Chem)
TorsionRule.AngleEntry (CDPL.ConfGen)	FileCDFBZ2MoleculeReader (CDPL.Chem)	NullPointerException (CDPL.Base)
TorsionRuleMatch.AtomArray (CDPL.ConfGen)	FileCDFBZ2ReactionReader (CDPL.Chem)	NitroAciTautomerization (CDPL.Chem)
AtomAutoCorrelation3DVectorCalculator (CDPL.Descr)	FileCDFBZ2ReactionWriter (CDPL.Chem)	NitrosoOximeTautomerization (CDPL.Chem)
AtomRDFCodeCalculator (CDPL.Descr)	FileCDFGZMolecularGraphWriter (CDPL.Chem)	NOTAtomMatchExpression (CDPL.Chem)
AutoCorrelation2DVectorCalculator (CDPL.Descr)	FileCDFGZMoleculeReader (CDPL.Chem)	NOTBondMatchExpression (CDPL.Chem)
AtomProperty (CDPL.ForceField)	FileCDFGZReactionReader (CDPL.Chem)	NOTMolecularGraphMatchExpression (CDPL.Chem)
AtomDensityGridCalculator (CDPL.GRAIL)	FileCDFGZReactionWriter (CDPL.Chem)	NOTReactionMatchExpression (CDPL.Chem)
AttributedGridProperty (CDPL.GRAIL)	FileCDFMolecularGraphWriter (CDPL.Chem)	NitrogenEnumerationMode (CDPL.ConfGen)
AttributedGridPropertyDefault (CDPL.GRAIL)	FileCDFMoleculeReader (CDPL.Chem)	NegIonizableFeatureGenerator (CDPL.Pharm)
BindingAffinityCalculator.AffinityMeasure (CDPL.GRAIL)	FileCDFReactionReader (CDPL.Chem)	o
AttributedGrid (CDPL.Grid)	FileCDFReactionWriter (CDPL.Chem)
AttributedGridProperty (CDPL.Grid)	FileINCHIMolecularGraphWriter (CDPL.Chem)	IOStream.OpenMode (CDPL.Base)
AttributedGridPropertyDefault (CDPL.Grid)	FileINCHIMoleculeReader (CDPL.Chem)	OperationFailed (CDPL.Base)
AtomHydrophobicityCalculator (CDPL.MolProp)	FileJMEMolecularGraphWriter (CDPL.Chem)	OStream (CDPL.Base)
AtomProperty (CDPL.MolProp)	FileJMEMoleculeReader (CDPL.Chem)	MolecularGraphIOManager.OutputHandlerSequence (CDPL.Chem)
AtomPropertyDefault (CDPL.MolProp)	FileJMEReactionReader (CDPL.Chem)	MoleculeIOManager.OutputHandlerSequence (CDPL.Chem)
AromaticFeatureGenerator (CDPL.Pharm)	FileJMEReactionWriter (CDPL.Chem)	ORAtomMatchExpressionList (CDPL.Chem)
AlignedColorTverskyScore (CDPL.Shape)	FileMOL2BZ2MolecularGraphWriter (CDPL.Chem)	ORBondMatchExpressionList (CDPL.Chem)
AlignedShapeTverskyScore (CDPL.Shape)	FileMOL2BZ2MoleculeReader (CDPL.Chem)	ORMolecularGraphMatchExpressionList (CDPL.Chem)
AlignedTotalOverlapTverskyScore (CDPL.Shape)	FileMOL2GZMolecularGraphWriter (CDPL.Chem)	ORReactionMatchExpressionList (CDPL.Chem)
AlignedTverskyComboScore (CDPL.Shape)	FileMOL2GZMoleculeReader (CDPL.Chem)	ReactionIOManager.OutputHandlerSequence (CDPL.Chem)
AlignmentResult (CDPL.Shape)	FileMOL2MolecularGraphWriter (CDPL.Chem)	DRegularGridIOManager.OutputHandlerSequence (CDPL.Grid)
AlignmentResultSelectionMode (CDPL.Shape)	FileMOL2MoleculeReader (CDPL.Chem)	DRegularGridSetIOManager.OutputHandlerSequence (CDPL.Grid)
ScreeningSettings.AlignmentMode (CDPL.Shape)	FileMOLMolecularGraphWriter (CDPL.Chem)	FeatureContainerIOManager.OutputHandlerSequence (CDPL.Pharm)
Alignment (CDPL.Vis)	FileMOLMoleculeReader (CDPL.Chem)	OrthogonalPiPiInteractionConstraint (CDPL.Pharm)
ArrowStyle (CDPL.Vis)	FileRDFBZ2ReactionReader (CDPL.Chem)	OrthogonalPiPiInteractionScore (CDPL.Pharm)
AtomColorTable (CDPL.Vis)	FileRDFBZ2ReactionWriter (CDPL.Chem)	PharmacophoreIOManager.OutputHandlerSequence (CDPL.Pharm)
AtomProperty (CDPL.Vis)	FileRDFGZReactionReader (CDPL.Chem)	p
AtomPropertyDefault (CDPL.Vis)	FileRDFGZReactionWriter (CDPL.Chem)
b	FileRDFReactionReader (CDPL.Chem)	PropertyContainer (CDPL.Base)
	FileRDFReactionWriter (CDPL.Chem)	PDBBZ2MolecularGraphOutputHandler (CDPL.Biomol)
BadCast (CDPL.Base)	FileRXNReactionWriter (CDPL.Chem)	PDBBZ2MolecularGraphWriter (CDPL.Biomol)
Atom.BondSequence (CDPL.Chem)	FileSDFBZ2MolecularGraphWriter (CDPL.Chem)	PDBBZ2MoleculeInputHandler (CDPL.Biomol)
BasicAtom (CDPL.Chem)	FileSDFBZ2MoleculeReader (CDPL.Chem)	PDBBZ2MoleculeReader (CDPL.Biomol)
BasicBond (CDPL.Chem)	FileSDFGZMolecularGraphWriter (CDPL.Chem)	PDBData (CDPL.Biomol)
BasicMolecule (CDPL.Chem)	FileSDFGZMoleculeReader (CDPL.Chem)	PDBFormatVersion (CDPL.Biomol)
BasicReaction (CDPL.Chem)	FileSDFMolecularGraphWriter (CDPL.Chem)	PDBGZMolecularGraphOutputHandler (CDPL.Biomol)
BemisMurckoAnalyzer (CDPL.Chem)	FileSDFMoleculeReader (CDPL.Chem)	PDBGZMolecularGraphWriter (CDPL.Biomol)
Bond (CDPL.Chem)	FileSMARTSMolecularGraphWriter (CDPL.Chem)	PDBGZMoleculeInputHandler (CDPL.Biomol)
BondConfiguration (CDPL.Chem)	FileSMARTSMoleculeReader (CDPL.Chem)	PDBGZMoleculeReader (CDPL.Biomol)
BondConfigurationMatchExpression (CDPL.Chem)	FileSMARTSReactionReader (CDPL.Chem)	PDBMolecularGraphOutputHandler (CDPL.Biomol)
BondContainer (CDPL.Chem)	FileSMARTSReactionWriter (CDPL.Chem)	PDBMolecularGraphWriter (CDPL.Biomol)
BondDirection (CDPL.Chem)	FileSMILESBZ2MolecularGraphWriter (CDPL.Chem)	PDBMoleculeInputHandler (CDPL.Biomol)
BondDirectionMatchExpression (CDPL.Chem)	FileSMILESBZ2MoleculeReader (CDPL.Chem)	PDBMoleculeReader (CDPL.Biomol)
BondMapping (CDPL.Chem)	FileSMILESBZ2ReactionReader (CDPL.Chem)	PatternAtomTyper (CDPL.Chem)
BondMatchConstraint (CDPL.Chem)	FileSMILESBZ2ReactionWriter (CDPL.Chem)	PatternAtomTyper.Pattern (CDPL.Chem)
BondMatchExpression (CDPL.Chem)	FileSMILESGZMolecularGraphWriter (CDPL.Chem)	PatternBasedTautomerizationRule (CDPL.Chem)
BondMatchExpressionList (CDPL.Chem)	FileSMILESGZMoleculeReader (CDPL.Chem)	PhosphinicAcidTautomerization (CDPL.Chem)
BondMatchExpressionPtrBondFunctor (CDPL.Chem)	FileSMILESGZReactionReader (CDPL.Chem)	PiElectronSystemList (CDPL.Chem)
BondOrderCalculator (CDPL.Chem)	FileSMILESGZReactionWriter (CDPL.Chem)	ProtonationStateStandardizer (CDPL.Chem)
BondPredicate (CDPL.Chem)	FileSMILESMolecularGraphWriter (CDPL.Chem)	SubstructureHistogramCalculator.Pattern (CDPL.Chem)
BondProperty (CDPL.Chem)	FileSMILESMoleculeReader (CDPL.Chem)	PathFingerprintGenerator (CDPL.Descr)
BondPropertyDefault (CDPL.Chem)	FileSMILESReactionReader (CDPL.Chem)	PharmacophoreAutoCorr3DDescriptorCalculator (CDPL.Descr)
BondPropertyFlag (CDPL.Chem)	FileSMILESReactionWriter (CDPL.Chem)	PharmacophoreRDFDescriptorCalculator (CDPL.Descr)
BondReactionCenterStatusMatchExpression (CDPL.Chem)	FileXYZBZ2MolecularGraphWriter (CDPL.Chem)	ParameterizationFailed (CDPL.ForceField)
BondStereoFlag (CDPL.Chem)	FileXYZBZ2MoleculeReader (CDPL.Chem)	PEOESigmaChargeCalculator (CDPL.MolProp)
BondStereoFlagCalculator (CDPL.Chem)	FileXYZGZMolecularGraphWriter (CDPL.Chem)	ParallelPiPiInteractionConstraint (CDPL.Pharm)
BondSubstituentDirectionMatchExpression (CDPL.Chem)	FileXYZGZMoleculeReader (CDPL.Chem)	ParallelPiPiInteractionScore (CDPL.Pharm)
BoolAtom2Functor (CDPL.Chem)	FileXYZMolecularGraphWriter (CDPL.Chem)	PatternBasedFeatureGenerator (CDPL.Pharm)
BoolAtom4Functor (CDPL.Chem)	FileXYZMoleculeReader (CDPL.Chem)	PatternBasedFeatureGenerator.PatternAtomLabelFlag (CDPL.Pharm)
BoolAtomMappingFunctor (CDPL.Chem)	Fragment (CDPL.Chem)	Pharmacophore (CDPL.Pharm)
BoolBond2Functor (CDPL.Chem)	FragmentGenerator (CDPL.Chem)	PharmacophoreAlignment (CDPL.Pharm)
BoolConstMolecularGraphFunctor (CDPL.Chem)	FragmentGenerator.FragmentationRule (CDPL.Chem)	PharmacophoreFitScore (CDPL.Pharm)
BoolEntity3D2Functor (CDPL.Chem)	FragmentGenerator.FragmentLink (CDPL.Chem)	PharmacophoreFitScreeningScore (CDPL.Pharm)
BoolEntity3D4Functor (CDPL.Chem)	FragmentList (CDPL.Chem)	PharmacophoreGenerator (CDPL.Pharm)
BoolEntity3DMappingFunctor (CDPL.Chem)	ProtonationStateStandardizer.Flavor (CDPL.Chem)	PharmacophoreInputHandler (CDPL.Pharm)
BoolMolecularGraphAtomBondMappingFunctor (CDPL.Chem)	FileCFLMoleculeReader (CDPL.ConfGen)	PharmacophoreIOManager (CDPL.Pharm)
BoolMolecularGraphFunctor (CDPL.Chem)	ForceFieldType (CDPL.ConfGen)	PharmacophoreReader (CDPL.Pharm)
BoolSTPairArrayFunctor (CDPL.Chem)	FragmentAssembler (CDPL.ConfGen)	PharmacophoreReaderBase (CDPL.Pharm)
BRICSAtomLabel (CDPL.Chem)	FragmentAssemblerSettings (CDPL.ConfGen)	PMLFeatureContainerOutputHandler (CDPL.Pharm)
BRICSFragmentGenerator (CDPL.Chem)	FragmentConformerGenerator (CDPL.ConfGen)	PMLFeatureContainerWriter (CDPL.Pharm)
BRICSRuleID (CDPL.Chem)	FragmentConformerGeneratorSettings (CDPL.ConfGen)	PMLPharmacophoreInputHandler (CDPL.Pharm)
Fragment.BondSequence (CDPL.Chem)	FragmentConformerGeneratorSettings.FragmentSettings (CDPL.ConfGen)	PMLPharmacophoreReader (CDPL.Pharm)
MolecularGraph.BondSequence (CDPL.Chem)	FragmentLibrary (CDPL.ConfGen)	PosIonizableFeatureGenerator (CDPL.Pharm)
Molecule.BondSequence (CDPL.Chem)	FragmentLibraryEntry (CDPL.ConfGen)	PSDMolecularGraphOutputHandler (CDPL.Pharm)
PatternBasedTautomerizationRule.BondOrderChange (CDPL.Chem)	FragmentLibraryGenerator (CDPL.ConfGen)	PSDMolecularGraphWriter (CDPL.Pharm)
BCUTDescriptorCalculator (CDPL.Descr)	FragmentType (CDPL.ConfGen)	PSDMoleculeInputHandler (CDPL.Pharm)
BurdenMatrixGenerator (CDPL.Descr)	FeatureAutoCorrelation3DVectorCalculator (CDPL.Descr)	PSDMoleculeReader (CDPL.Pharm)
BondProperty (CDPL.ForceField)	FeatureRDFCodeCalculator (CDPL.Descr)	PSDPharmacophoreInputHandler (CDPL.Pharm)
BindingAffinityCalculator (CDPL.GRAIL)	FeatureInteractionScoreGridCalculator (CDPL.GRAIL)	PSDPharmacophoreReader (CDPL.Pharm)
BuriednessGridCalculator (CDPL.GRAIL)	FeatureType (CDPL.GRAIL)	PSDScreeningDBAccessor (CDPL.Pharm)
BuriednessScore (CDPL.GRAIL)	FileCDFBZ2DRegularGridReader (CDPL.Grid)	PSDScreeningDBCreator (CDPL.Pharm)
BondProperty (CDPL.MolProp)	FileCDFBZ2DRegularGridSetReader (CDPL.Grid)	PrincipalAxesAlignmentStartGenerator (CDPL.Shape)
BasicFeature (CDPL.Pharm)	FileCDFBZ2DRegularGridSetWriter (CDPL.Grid)	PropertyValue (CDPL.Util)
BasicPharmacophore (CDPL.Pharm)	FileCDFBZ2DRegularGridWriter (CDPL.Grid)	PropertyValueProduct (CDPL.Util)
BoolDoubleFunctor (CDPL.Pharm)	FileCDFDRegularGridReader (CDPL.Grid)	Path2D (CDPL.Vis)
BoolFeature2Functor (CDPL.Pharm)	FileCDFDRegularGridSetReader (CDPL.Grid)	Path2DConverter (CDPL.Vis)
BoolFeature2Matrix4DFunctor (CDPL.Pharm)	FileCDFDRegularGridSetWriter (CDPL.Grid)	PathPrimitive2D (CDPL.Vis)
BoolFeature4Functor (CDPL.Pharm)	FileCDFDRegularGridWriter (CDPL.Grid)	PDFMolecularGraphOutputHandler (CDPL.Vis)
BoolFeatureFunctor (CDPL.Pharm)	FileCDFGZDRegularGridReader (CDPL.Grid)	PDFMolecularGraphWriter (CDPL.Vis)
BoolSearchHitDoubleFunctor (CDPL.Pharm)	FileCDFGZDRegularGridSetReader (CDPL.Grid)	PDFReactionOutputHandler (CDPL.Vis)
BoolSizeType2Functor (CDPL.Pharm)	FileCDFGZDRegularGridSetWriter (CDPL.Grid)	PDFReactionWriter (CDPL.Vis)
BoolAlignmentResult2Functor (CDPL.Shape)	FileCDFGZDRegularGridWriter (CDPL.Grid)	Pen (CDPL.Vis)
BoolSizeType2Functor (CDPL.Shape)	FRegularGrid (CDPL.Grid)	PNGMolecularGraphOutputHandler (CDPL.Vis)
BoolSizeTypeFunctor (CDPL.Shape)	FRegularGridSet (CDPL.Grid)	PNGMolecularGraphWriter (CDPL.Vis)
BitSet (CDPL.Util)	FSpatialGrid (CDPL.Grid)	PNGReactionOutputHandler (CDPL.Vis)
BitSetArray (CDPL.Util)	FGrid (CDPL.Math)	PNGReactionWriter (CDPL.Vis)
BronKerboschAlgorithm (CDPL.Util)	FGridExpression (CDPL.Math)	PointArray2D (CDPL.Vis)
BZip2IOStream (CDPL.Util)	FHomogenousCoordsAdapter (CDPL.Math)	PointListPrimitive2D (CDPL.Vis)
BZip2IStream (CDPL.Util)	FIdentityMatrix (CDPL.Math)	PolygonPrimitive2D (CDPL.Vis)
BZip2OStream (CDPL.Util)	FKabschAlgorithm (CDPL.Math)	PolylinePrimitive2D (CDPL.Vis)
BondProperty (CDPL.Vis)	FloatFVector2Functor (CDPL.Math)	PSMolecularGraphOutputHandler (CDPL.Vis)
BondPropertyDefault (CDPL.Vis)	FloatFVectorFunctor (CDPL.Math)	PSMolecularGraphWriter (CDPL.Vis)
Brush (CDPL.Vis)	FloatVector2FArray2Functor (CDPL.Math)	PSReactionOutputHandler (CDPL.Vis)
c	FloatVector2FArrayFunctor (CDPL.Math)	PSReactionWriter (CDPL.Vis)
	FloatVector3FArray2Functor (CDPL.Math)	q
CalculationFailed (CDPL.Base)	FloatVector3FArrayFunctor (CDPL.Math)
ControlParameterContainer (CDPL.Base)	FMatrix (CDPL.Math)	QtFontMetrics (CDPL.Vis.QtBackend)
ControlParameterList (CDPL.Base)	FMatrixColumn (CDPL.Math)	QtObjectFactory (CDPL.Vis.QtBackend)
ControlParameter (CDPL.Biomol)	FMatrixExpression (CDPL.Math)	QtRenderer2D (CDPL.Vis.QtBackend)
ControlParameterDefault (CDPL.Biomol)	FMatrixRange (CDPL.Math)	r
CanonicalNumberingCalculator (CDPL.Chem)	FMatrixRow (CDPL.Math)
CDFBZ2MolecularGraphOutputHandler (CDPL.Chem)	FMatrixSlice (CDPL.Math)	RangeError (CDPL.Base)
CDFBZ2MolecularGraphWriter (CDPL.Chem)	FMatrixTranspose (CDPL.Math)	PDBData.RecordType (CDPL.Biomol)
CDFBZ2MoleculeInputHandler (CDPL.Chem)	FMLRModel (CDPL.Math)	ResidueDictionary (CDPL.Biomol)
CDFBZ2MoleculeReader (CDPL.Chem)	FQuaternion (CDPL.Math)	ResidueList (CDPL.Biomol)
CDFBZ2ReactionInputHandler (CDPL.Chem)	FQuaternionExpression (CDPL.Math)	ResidueType (CDPL.Biomol)
CDFBZ2ReactionOutputHandler (CDPL.Chem)	FQuaternionVectorAdapter (CDPL.Math)	MatchConstraint.Relation (CDPL.Chem)
CDFBZ2ReactionReader (CDPL.Chem)	FRealQuaternion (CDPL.Math)	RadicalType (CDPL.Chem)
CDFBZ2ReactionWriter (CDPL.Chem)	FRegularSpatialGrid (CDPL.Math)	RDFBZ2ReactionInputHandler (CDPL.Chem)
CDFGZMolecularGraphOutputHandler (CDPL.Chem)	FRotationMatrix (CDPL.Math)	RDFBZ2ReactionOutputHandler (CDPL.Chem)
CDFGZMolecularGraphWriter (CDPL.Chem)	FScalarGrid (CDPL.Math)	RDFBZ2ReactionReader (CDPL.Chem)
CDFGZMoleculeInputHandler (CDPL.Chem)	FScalarMatrix (CDPL.Math)	RDFBZ2ReactionWriter (CDPL.Chem)
CDFGZMoleculeReader (CDPL.Chem)	FScalarVector (CDPL.Math)	RDFGZReactionInputHandler (CDPL.Chem)
CDFGZReactionInputHandler (CDPL.Chem)	FScalingMatrix (CDPL.Math)	RDFGZReactionOutputHandler (CDPL.Chem)
CDFGZReactionOutputHandler (CDPL.Chem)	FTranslationMatrix (CDPL.Math)	RDFGZReactionReader (CDPL.Chem)
CDFGZReactionReader (CDPL.Chem)	FUnitVector (CDPL.Math)	RDFGZReactionWriter (CDPL.Chem)
CDFGZReactionWriter (CDPL.Chem)	FVector (CDPL.Math)	RDFReactionInputHandler (CDPL.Chem)
CDFMolecularGraphOutputHandler (CDPL.Chem)	FVectorBFGSMinimizer (CDPL.Math)	RDFReactionOutputHandler (CDPL.Chem)
CDFMolecularGraphWriter (CDPL.Chem)	FVectorExpression (CDPL.Math)	RDFReactionReader (CDPL.Chem)
CDFMoleculeInputHandler (CDPL.Chem)	FVectorQuaternionAdapter (CDPL.Math)	RDFReactionWriter (CDPL.Chem)
CDFMoleculeReader (CDPL.Chem)	FVectorRange (CDPL.Math)	Reaction (CDPL.Chem)
CDFReactionInputHandler (CDPL.Chem)	FVectorSlice (CDPL.Math)	ReactionAtomMappingMatchExpression (CDPL.Chem)
CDFReactionOutputHandler (CDPL.Chem)	FZeroGrid (CDPL.Math)	ReactionCenterStatus (CDPL.Chem)
CDFReactionReader (CDPL.Chem)	FZeroMatrix (CDPL.Math)	ReactionComponentGroupingMatchExpression (CDPL.Chem)
CDFReactionWriter (CDPL.Chem)	FZeroVector (CDPL.Math)	ReactionInputHandler (CDPL.Chem)
ChEMBLStandardizer (CDPL.Chem)	Feature (CDPL.Pharm)	ReactionIOManager (CDPL.Chem)
ChEMBLStandardizer.ChangeFlags (CDPL.Chem)	Feature3DCoordinatesFunction (CDPL.Pharm)	ReactionMatchConstraint (CDPL.Chem)
CIPConfigurationLabeler (CDPL.Chem)	FeatureContainer (CDPL.Pharm)	ReactionMatchExpression (CDPL.Chem)
CIPDescriptor (CDPL.Chem)	FeatureContainerIOManager (CDPL.Pharm)	ReactionMatchExpressionList (CDPL.Chem)
CIPPriorityCalculator (CDPL.Chem)	FeatureContainerOutputHandler (CDPL.Pharm)	ReactionOutputHandler (CDPL.Chem)
CommonConnectedSubstructureSearch (CDPL.Chem)	FeatureContainerProperty (CDPL.Pharm)	ReactionProperty (CDPL.Chem)
CompleteRingSet (CDPL.Chem)	FeatureContainerPropertyDefault (CDPL.Pharm)	ReactionPropertyDefault (CDPL.Chem)
ComponentSet (CDPL.Chem)	FeatureContainerWriter (CDPL.Pharm)	ReactionReader (CDPL.Chem)
CompoundMoleculeReader (CDPL.Chem)	FeatureContainerWriterBase (CDPL.Pharm)	ReactionReaderBase (CDPL.Chem)
CompoundReactionReader (CDPL.Chem)	FeatureDistanceConstraint (CDPL.Pharm)	ReactionRole (CDPL.Chem)
ConnectedSubstructureSet (CDPL.Chem)	FeatureDistanceScore (CDPL.Pharm)	ReactionSubstructureSearch (CDPL.Chem)
ControlParameter (CDPL.Chem)	FeatureGenerator (CDPL.Pharm)	ReactionWriter (CDPL.Chem)
ControlParameterDefault (CDPL.Chem)	FeatureGeometry (CDPL.Pharm)	ReactionWriterBase (CDPL.Chem)
CyclicSubstructure (CDPL.Chem)	FeatureGeometryMatchFunctor (CDPL.Pharm)	Reactor (CDPL.Chem)
Reaction.ComponentSequence (CDPL.Chem)	FeatureInteractionScore (CDPL.Pharm)	RECAPAtomLabel (CDPL.Chem)
CallbackFunction (CDPL.ConfGen)	FeatureInteractionScoreCombiner (CDPL.Pharm)	RECAPFragmentGenerator (CDPL.Chem)
CanonicalFragment (CDPL.ConfGen)	FeatureMapping (CDPL.Pharm)	RECAPRuleID (CDPL.Chem)
CFLMoleculeInputHandler (CDPL.ConfGen)	FeaturePairDistanceMatchFunctor (CDPL.Pharm)	ResonanceStructureGenerator (CDPL.Chem)
CFLMoleculeReader (CDPL.ConfGen)	FeaturePositionMatchFunctor (CDPL.Pharm)	RXNReactionInputHandler (CDPL.Chem)
ConformerData (CDPL.ConfGen)	FeatureProperty (CDPL.Pharm)	RXNReactionOutputHandler (CDPL.Chem)
ConformerGenerator (CDPL.ConfGen)	FeaturePropertyDefault (CDPL.Pharm)	RXNReactionReader (CDPL.Chem)
ConformerGeneratorSettings (CDPL.ConfGen)	FeatureSet (CDPL.Pharm)	RXNReactionWriter (CDPL.Chem)
ConformerSamplingMode (CDPL.ConfGen)	FeatureType (CDPL.Pharm)	StereoDescriptor.ReferenceAtomArray (CDPL.Chem)
ControlParameter (CDPL.ConfGen)	FeatureTypeHistogram (CDPL.Pharm)	ReturnCode (CDPL.ConfGen)
ControlParameterDefault (CDPL.ConfGen)	FeatureTypeMatchFunctor (CDPL.Pharm)	RMSDConformerSelector (CDPL.ConfGen)
TorsionCategory.CategorySequence (CDPL.ConfGen)	FileCDFBZ2FeatureContainerWriter (CDPL.Pharm)	TorsionCategory.RuleSequence (CDPL.ConfGen)
CircularFingerprintGenerator (CDPL.Descr)	FileCDFBZ2PharmacophoreReader (CDPL.Pharm)	Range (CDPL.Math)
CDFBZ2DRegularGridInputHandler (CDPL.Grid)	FileCDFFeatureContainerWriter (CDPL.Pharm)	GaussianShapeFunctionAlignment.Result (CDPL.Shape)
CDFBZ2DRegularGridOutputHandler (CDPL.Grid)	FileCDFGZFeatureContainerWriter (CDPL.Pharm)	ReferenceColorTverskyScore (CDPL.Shape)
CDFBZ2DRegularGridReader (CDPL.Grid)	FileCDFGZPharmacophoreReader (CDPL.Pharm)	ReferenceShapeTverskyScore (CDPL.Shape)
CDFBZ2DRegularGridSetInputHandler (CDPL.Grid)	FileCDFPharmacophoreReader (CDPL.Pharm)	ReferenceTotalOverlapTverskyScore (CDPL.Shape)
CDFBZ2DRegularGridSetOutputHandler (CDPL.Grid)	FilePMLFeatureContainerWriter (CDPL.Pharm)	ReferenceTverskyComboScore (CDPL.Shape)
CDFBZ2DRegularGridSetReader (CDPL.Grid)	FilePMLPharmacophoreReader (CDPL.Pharm)	ReactionProperty (CDPL.Vis)
CDFBZ2DRegularGridSetWriter (CDPL.Grid)	FileScreeningHitCollector (CDPL.Pharm)	ReactionPropertyDefault (CDPL.Vis)
CDFBZ2DRegularGridWriter (CDPL.Grid)	FastGaussianShapeAlignment (CDPL.Shape)	ReactionView2D (CDPL.Vis)
CDFDRegularGridInputHandler (CDPL.Grid)	FastGaussianShapeOverlapFunction (CDPL.Shape)	Rectangle2D (CDPL.Vis)
CDFDRegularGridOutputHandler (CDPL.Grid)	FilePDFMolecularGraphWriter (CDPL.Vis)	Renderer2D (CDPL.Vis)
CDFDRegularGridReader (CDPL.Grid)	FilePDFReactionWriter (CDPL.Vis)	s
CDFDRegularGridSetInputHandler (CDPL.Grid)	FilePNGMolecularGraphWriter (CDPL.Vis)
CDFDRegularGridSetOutputHandler (CDPL.Grid)	FilePNGReactionWriter (CDPL.Vis)	SizeError (CDPL.Base)
CDFDRegularGridSetReader (CDPL.Grid)	FilePSMolecularGraphWriter (CDPL.Vis)	StringIOStream (CDPL.Base)
CDFDRegularGridSetWriter (CDPL.Grid)	FilePSReactionWriter (CDPL.Vis)	ResonanceStructureGenerator.StructureData (CDPL.Chem)
CDFDRegularGridWriter (CDPL.Grid)	FileSVGMolecularGraphWriter (CDPL.Vis)	SDFBZ2MolecularGraphOutputHandler (CDPL.Chem)
CDFGZDRegularGridInputHandler (CDPL.Grid)	FileSVGReactionWriter (CDPL.Vis)	SDFBZ2MolecularGraphWriter (CDPL.Chem)
CDFGZDRegularGridOutputHandler (CDPL.Grid)	Font (CDPL.Vis)	SDFBZ2MoleculeInputHandler (CDPL.Chem)
CDFGZDRegularGridReader (CDPL.Grid)	FontMetrics (CDPL.Vis)	SDFBZ2MoleculeReader (CDPL.Chem)
CDFGZDRegularGridSetInputHandler (CDPL.Grid)	Path2D.FillRule (CDPL.Vis)	SDFGZMolecularGraphOutputHandler (CDPL.Chem)
CDFGZDRegularGridSetOutputHandler (CDPL.Grid)	g	SDFGZMolecularGraphWriter (CDPL.Chem)
CDFGZDRegularGridSetReader (CDPL.Grid)		SDFGZMoleculeInputHandler (CDPL.Chem)
CDFGZDRegularGridSetWriter (CDPL.Grid)	GenericHydrogen13ShiftTautomerization (CDPL.Chem)	SDFGZMoleculeReader (CDPL.Chem)
CDFGZDRegularGridWriter (CDPL.Grid)	GenericHydrogen15ShiftTautomerization (CDPL.Chem)	SDFMolecularGraphOutputHandler (CDPL.Chem)
CompoundDRegularGridReader (CDPL.Grid)	GeneralizedBellAtomDensity (CDPL.GRAIL)	SDFMolecularGraphWriter (CDPL.Chem)
CompoundDRegularGridSetReader (CDPL.Grid)	GRAILDataSetGenerator (CDPL.GRAIL)	SDFMoleculeInputHandler (CDPL.Chem)
ControlParameter (CDPL.Grid)	GRAILDescriptorCalculator (CDPL.GRAIL)	SDFMoleculeReader (CDPL.Chem)
ControlParameterDefault (CDPL.Grid)	GRAILXDescriptorCalculator (CDPL.GRAIL)	SizeTypeAtomFunctor (CDPL.Chem)
ConstDGridExpression (CDPL.Math)	GaussianShape (CDPL.Shape)	SizeTypeAtomMolecularGraphFunctor (CDPL.Chem)
ConstDHomogenousCoordsAdapter (CDPL.Math)	GaussianShapeAlignment (CDPL.Shape)	SmallestSetOfSmallestRings (CDPL.Chem)
ConstDMatrixColumn (CDPL.Math)	GaussianShapeAlignmentStartGenerator (CDPL.Shape)	SMARTSMolecularGraphOutputHandler (CDPL.Chem)
ConstDMatrixExpression (CDPL.Math)	GaussianShapeFunction (CDPL.Shape)	SMARTSMolecularGraphWriter (CDPL.Chem)
ConstDMatrixRange (CDPL.Math)	GaussianShapeFunctionAlignment (CDPL.Shape)	SMARTSMoleculeInputHandler (CDPL.Chem)
ConstDMatrixRow (CDPL.Math)	GaussianShapeGenerator (CDPL.Shape)	SMARTSMoleculeReader (CDPL.Chem)
ConstDMatrixSlice (CDPL.Math)	GaussianShapeOverlapFunction (CDPL.Shape)	SMARTSReactionInputHandler (CDPL.Chem)
ConstDMatrixTranspose (CDPL.Math)	GaussianShapeSet (CDPL.Shape)	SMARTSReactionOutputHandler (CDPL.Chem)
ConstDQuaternionExpression (CDPL.Math)	GZipIOStream (CDPL.Util)	SMARTSReactionReader (CDPL.Chem)
ConstDQuaternionVectorAdapter (CDPL.Math)	GZipIStream (CDPL.Util)	SMARTSReactionWriter (CDPL.Chem)
ConstDVectorExpression (CDPL.Math)	GZipOStream (CDPL.Util)	SMILESBZ2MolecularGraphOutputHandler (CDPL.Chem)
ConstDVectorQuaternionAdapter (CDPL.Math)	GraphicsPrimitive2D (CDPL.Vis)	SMILESBZ2MolecularGraphWriter (CDPL.Chem)
ConstDVectorRange (CDPL.Math)	h	SMILESBZ2MoleculeInputHandler (CDPL.Chem)
ConstDVectorSlice (CDPL.Math)		SMILESBZ2MoleculeReader (CDPL.Chem)
ConstFGridExpression (CDPL.Math)	HierarchyView (CDPL.Biomol)	SMILESBZ2ReactionInputHandler (CDPL.Chem)
ConstFHomogenousCoordsAdapter (CDPL.Math)	HierarchyViewChain (CDPL.Biomol)	SMILESBZ2ReactionOutputHandler (CDPL.Chem)
ConstFMatrixColumn (CDPL.Math)	HierarchyViewFragment (CDPL.Biomol)	SMILESBZ2ReactionReader (CDPL.Chem)
ConstFMatrixExpression (CDPL.Math)	HierarchyViewModel (CDPL.Biomol)	SMILESBZ2ReactionWriter (CDPL.Chem)
ConstFMatrixRange (CDPL.Math)	HierarchyViewNode (CDPL.Biomol)	SMILESGZMolecularGraphOutputHandler (CDPL.Chem)
ConstFMatrixRow (CDPL.Math)	HashCodeCalculator (CDPL.Chem)	SMILESGZMolecularGraphWriter (CDPL.Chem)
ConstFMatrixSlice (CDPL.Math)	HybridizationState (CDPL.Chem)	SMILESGZMoleculeInputHandler (CDPL.Chem)
ConstFMatrixTranspose (CDPL.Math)	Hydrogen3DCoordinatesCalculator (CDPL.Chem)	SMILESGZMoleculeReader (CDPL.Chem)
ConstFQuaternionExpression (CDPL.Math)	MMFF94VanDerWaalsInteraction.HDonorAcceptorType (CDPL.ForceField)	SMILESGZReactionInputHandler (CDPL.Chem)
ConstFQuaternionVectorAdapter (CDPL.Math)	HBondAcceptorAtomType (CDPL.MolProp)	SMILESGZReactionOutputHandler (CDPL.Chem)
ConstFVectorExpression (CDPL.Math)	HBondAcceptorAtomTyper (CDPL.MolProp)	SMILESGZReactionReader (CDPL.Chem)
ConstFVectorQuaternionAdapter (CDPL.Math)	HBondDonorAtomType (CDPL.MolProp)	SMILESGZReactionWriter (CDPL.Chem)
ConstFVectorRange (CDPL.Math)	HBondDonorAtomTyper (CDPL.MolProp)	SMILESMolecularGraphOutputHandler (CDPL.Chem)
ConstFVectorSlice (CDPL.Math)	HBondAcceptorFeatureGenerator (CDPL.Pharm)	SMILESMolecularGraphWriter (CDPL.Chem)
ConstLHomogenousCoordsAdapter (CDPL.Math)	HBondDonorFeatureGenerator (CDPL.Pharm)	SMILESMoleculeInputHandler (CDPL.Chem)
ConstLMatrixColumn (CDPL.Math)	HBondingInteractionConstraint (CDPL.Pharm)	SMILESMoleculeReader (CDPL.Chem)
ConstLMatrixExpression (CDPL.Math)	HBondingInteractionScore (CDPL.Pharm)	SMILESReactionInputHandler (CDPL.Chem)
ConstLMatrixRange (CDPL.Math)	HydrophobicAtomFeatureGenerator (CDPL.Pharm)	SMILESReactionOutputHandler (CDPL.Chem)
ConstLMatrixRow (CDPL.Math)	HydrophobicFeatureGenerator (CDPL.Pharm)	SMILESReactionReader (CDPL.Chem)
ConstLMatrixSlice (CDPL.Math)	HydrophobicInteractionConstraint (CDPL.Pharm)	SMILESReactionWriter (CDPL.Chem)
ConstLMatrixTranspose (CDPL.Math)	HydrophobicInteractionScore (CDPL.Pharm)	SpatialAtomAlignment (CDPL.Chem)
ConstLowerTriangularDMatrixAdapter (CDPL.Math)	ScreeningProcessor.HitReportMode (CDPL.Pharm)	SpatialEntity3DAlignment (CDPL.Chem)
ConstLowerTriangularFMatrixAdapter (CDPL.Math)	i	StereoDescriptor (CDPL.Chem)
ConstLowerTriangularLMatrixAdapter (CDPL.Math)		StereoisomerGenerator (CDPL.Chem)
ConstLowerTriangularULMatrixAdapter (CDPL.Math)	IndexError (CDPL.Base)	StereoisomerGenerator.StereoDescriptorArray (CDPL.Chem)
ConstLQuaternionExpression (CDPL.Math)	IOError (CDPL.Base)	StringDataBlock (CDPL.Chem)
ConstLQuaternionVectorAdapter (CDPL.Math)	IOStream (CDPL.Base)	StringDataBlockEntry (CDPL.Chem)
ConstLVectorExpression (CDPL.Math)	IStream (CDPL.Base)	SubstructureHistogramCalculator (CDPL.Chem)
ConstLVectorQuaternionAdapter (CDPL.Math)	ItemNotFound (CDPL.Base)	SubstructureSearch (CDPL.Chem)
ConstLVectorRange (CDPL.Math)	ImineEnamineTautomerization (CDPL.Chem)	SulfenicAcidTautomerization (CDPL.Chem)
ConstLVectorSlice (CDPL.Math)	INCHIMolecularGraphOutputHandler (CDPL.Chem)	SurfaceAtomExtractor (CDPL.Chem)
ConstULHomogenousCoordsAdapter (CDPL.Math)	INCHIMolecularGraphWriter (CDPL.Chem)	SybylAtomType (CDPL.Chem)
ConstULMatrixColumn (CDPL.Math)	INCHIMoleculeInputHandler (CDPL.Chem)	SybylBondType (CDPL.Chem)
ConstULMatrixExpression (CDPL.Math)	INCHIMoleculeReader (CDPL.Chem)	SymmetryClassCalculator (CDPL.Chem)
ConstULMatrixRange (CDPL.Math)	INCHIReturnCode (CDPL.Chem)	DGConstraintGenerator.StereoCenterData (CDPL.ConfGen)
ConstULMatrixRow (CDPL.Math)	MolecularGraphIOManager.InputHandlerSequence (CDPL.Chem)	StructureGenerationMode (CDPL.ConfGen)
ConstULMatrixSlice (CDPL.Math)	MoleculeIOManager.InputHandlerSequence (CDPL.Chem)	StructureGenerator (CDPL.ConfGen)
ConstULMatrixTranspose (CDPL.Math)	ReactionIOManager.InputHandlerSequence (CDPL.Chem)	StructureGeneratorSettings (CDPL.ConfGen)
ConstULQuaternionExpression (CDPL.Math)	InteractionFilterFunction2 (CDPL.ForceField)	FeatureInteractionScoreGridCalculator.ScoreSumFunctor (CDPL.GRAIL)
ConstULQuaternionVectorAdapter (CDPL.Math)	InteractionFilterFunction3 (CDPL.ForceField)	DVectorBFGSMinimizer.Status (CDPL.Math)
ConstULVectorExpression (CDPL.Math)	InteractionFilterFunction4 (CDPL.ForceField)	FVectorBFGSMinimizer.Status (CDPL.Math)
ConstULVectorQuaternionAdapter (CDPL.Math)	InteractionType (CDPL.ForceField)	Slice (CDPL.Math)
ConstULVectorRange (CDPL.Math)	DRegularGridIOManager.InputHandlerSequence (CDPL.Grid)	SparseDMatrix (CDPL.Math)
ConstULVectorSlice (CDPL.Math)	DRegularGridSetIOManager.InputHandlerSequence (CDPL.Grid)	SparseDVector (CDPL.Math)
ConstUnitLowerTriangularDMatrixAdapter (CDPL.Math)	FeatureContainerIOManager.InputHandlerSequence (CDPL.Pharm)	SparseFMatrix (CDPL.Math)
ConstUnitLowerTriangularFMatrixAdapter (CDPL.Math)	InteractionAnalyzer (CDPL.Pharm)	SparseFVector (CDPL.Math)
ConstUnitLowerTriangularLMatrixAdapter (CDPL.Math)	InteractionConstraintConnector (CDPL.Pharm)	SparseLMatrix (CDPL.Math)
ConstUnitLowerTriangularULMatrixAdapter (CDPL.Math)	InteractionPharmacophoreGenerator (CDPL.Pharm)	SparseLVector (CDPL.Math)
ConstUnitUpperTriangularDMatrixAdapter (CDPL.Math)	IonicInteractionConstraint (CDPL.Pharm)	SparseULMatrix (CDPL.Math)
ConstUnitUpperTriangularFMatrixAdapter (CDPL.Math)	IonicInteractionScore (CDPL.Pharm)	SparseULVector (CDPL.Math)
ConstUnitUpperTriangularLMatrixAdapter (CDPL.Math)	PharmacophoreIOManager.InputHandlerSequence (CDPL.Pharm)	Vector2DArrayBFGSMinimizer.Status (CDPL.Math)
ConstUnitUpperTriangularULMatrixAdapter (CDPL.Math)	j	Vector2FArrayBFGSMinimizer.Status (CDPL.Math)
ConstUpperTriangularDMatrixAdapter (CDPL.Math)		Vector3DArrayBFGSMinimizer.Status (CDPL.Math)
ConstUpperTriangularFMatrixAdapter (CDPL.Math)	JMEMolecularGraphOutputHandler (CDPL.Chem)	Vector3FArrayBFGSMinimizer.Status (CDPL.Math)
ConstUpperTriangularLMatrixAdapter (CDPL.Math)	JMEMolecularGraphWriter (CDPL.Chem)	ScreeningDBAccessor (CDPL.Pharm)
ConstUpperTriangularULMatrixAdapter (CDPL.Math)	JMEMoleculeInputHandler (CDPL.Chem)	ScreeningDBCreator (CDPL.Pharm)
CoordinationGeometry (CDPL.MolProp)	JMEMoleculeReader (CDPL.Chem)	ScreeningProcessor (CDPL.Pharm)
CationPiInteractionConstraint (CDPL.Pharm)	JMEReactionInputHandler (CDPL.Chem)	ScreeningProcessor.SearchHit (CDPL.Pharm)
CationPiInteractionScore (CDPL.Pharm)	JMEReactionOutputHandler (CDPL.Chem)	SpatialFeatureAlignment (CDPL.Pharm)
CDFBZ2FeatureContainerOutputHandler (CDPL.Pharm)	JMEReactionReader (CDPL.Chem)	SpatialFeatureMapping (CDPL.Pharm)
CDFBZ2FeatureContainerWriter (CDPL.Pharm)	JMEReactionWriter (CDPL.Chem)	ScreeningProcessor (CDPL.Shape)
CDFBZ2PharmacophoreInputHandler (CDPL.Pharm)	Pen.JoinStyle (CDPL.Vis)	ScreeningSettings (CDPL.Shape)
CDFBZ2PharmacophoreReader (CDPL.Pharm)	k	ScreeningSettings.ScreeningMode (CDPL.Shape)
CDFFeatureContainerOutputHandler (CDPL.Pharm)		ShapeTanimotoScore (CDPL.Shape)
CDFFeatureContainerWriter (CDPL.Pharm)	KekuleStructureCalculator (CDPL.Chem)	ShapeTverskyScore (CDPL.Shape)
CDFGZFeatureContainerOutputHandler (CDPL.Pharm)	KeteneYnolTautomerization (CDPL.Chem)	SymmetryClass (CDPL.Shape)
CDFGZFeatureContainerWriter (CDPL.Pharm)	KetoEnolTautomerization (CDPL.Chem)	SArray (CDPL.Util)
CDFGZPharmacophoreInputHandler (CDPL.Pharm)	l	STArray (CDPL.Util)
CDFGZPharmacophoreReader (CDPL.Pharm)		STPair (CDPL.Util)
CDFPharmacophoreInputHandler (CDPL.Pharm)	LookupKey (CDPL.Base)	STPairArray (CDPL.Util)
CDFPharmacophoreReader (CDPL.Pharm)	LactamLactimTautomerization (CDPL.Chem)	Brush.Style (CDPL.Vis)
CompoundPharmacophoreReader (CDPL.Pharm)	LogMessageCallbackFunction (CDPL.ConfGen)	SizeAdjustment (CDPL.Vis)
ControlParameter (CDPL.Pharm)	LHomogenousCoordsAdapter (CDPL.Math)	SizeSpecification (CDPL.Vis)
ControlParameterDefault (CDPL.Pharm)	LIdentityMatrix (CDPL.Math)	StructureView2D (CDPL.Vis)
DefaultPharmacophoreGenerator.Configuration (CDPL.Pharm)	LMatrix (CDPL.Math)	SVGMolecularGraphOutputHandler (CDPL.Vis)
ColorTanimotoScore (CDPL.Shape)	LMatrixColumn (CDPL.Math)	SVGMolecularGraphWriter (CDPL.Vis)
ColorTverskyScore (CDPL.Shape)	LMatrixExpression (CDPL.Math)	SVGReactionOutputHandler (CDPL.Vis)
ScreeningSettings.ColorFeatureType (CDPL.Shape)	LMatrixRange (CDPL.Math)	SVGReactionWriter (CDPL.Vis)
CairoFontMetrics (CDPL.Vis.CairoBackend)	LMatrixRow (CDPL.Math)	t
CairoRenderer2D (CDPL.Vis.CairoBackend)	LMatrixSlice (CDPL.Math)
ClipPathPrimitive2D (CDPL.Vis)	LMatrixTranspose (CDPL.Math)	MatchConstraintList.Type (CDPL.Chem)
Color (CDPL.Vis)	Lower (CDPL.Math)	TautomerGenerator (CDPL.Chem)
ColorTable (CDPL.Vis)	LQuaternion (CDPL.Math)	TautomerizationRule (CDPL.Chem)
ControlParameter (CDPL.Vis)	LQuaternionExpression (CDPL.Math)	TautomerizationType (CDPL.Chem)
ControlParameterDefault (CDPL.Vis)	LQuaternionVectorAdapter (CDPL.Math)	TautomerScore (CDPL.Chem)
Pen.CapStyle (CDPL.Vis)	LRealQuaternion (CDPL.Math)	TopologicalAtomAlignment (CDPL.Chem)
d	LRotationMatrix (CDPL.Math)	TopologicalEntity3DAlignment (CDPL.Chem)
	LScalarMatrix (CDPL.Math)	TorsionCategory (CDPL.ConfGen)
DataFormat (CDPL.Base)	LScalarVector (CDPL.Math)	TorsionDriver (CDPL.ConfGen)
DataIOBase (CDPL.Base)	LScalingMatrix (CDPL.Math)	TorsionDriverSettings (CDPL.ConfGen)
DataFormat (CDPL.Biomol)	LTranslationMatrix (CDPL.Math)	TorsionLibrary (CDPL.ConfGen)
DataFormat (CDPL.Chem)	LUnitVector (CDPL.Math)	TorsionRule (CDPL.ConfGen)
DefaultMultiConfMoleculeInputProcessor (CDPL.Chem)	LVector (CDPL.Math)	TorsionRuleMatch (CDPL.ConfGen)
DefaultTautomerGenerator (CDPL.Chem)	LVectorExpression (CDPL.Math)	TorsionRuleMatcher (CDPL.ConfGen)
DoubleAtom2Functor (CDPL.Chem)	LVectorQuaternionAdapter (CDPL.Math)	TopologicalAtomDistanceFunction (CDPL.ForceField)
DoubleAtom2UInt2Functor (CDPL.Chem)	LVectorRange (CDPL.Math)	TPSACalculator (CDPL.MolProp)
DoubleAtom2UIntFunctor (CDPL.Chem)	LVectorSlice (CDPL.Math)	TopologicalFeatureAlignment (CDPL.Pharm)
DoubleAtomFunctor (CDPL.Chem)	LZeroMatrix (CDPL.Math)	TanimotoComboScore (CDPL.Shape)
DoubleDVectorFunctor (CDPL.Chem)	LZeroVector (CDPL.Math)	TotalOverlapTanimotoScore (CDPL.Shape)
DoubleEntity3D2Functor (CDPL.Chem)	LogSCalculator (CDPL.MolProp)	TotalOverlapTverskyScore (CDPL.Shape)
DoubleEntity3DFunctor (CDPL.Chem)	LArray (CDPL.Util)	TverskyComboScore (CDPL.Shape)
DoubleVector3D2AtomFunctor (CDPL.Chem)	LayoutDirection (CDPL.Vis)	TextLabelPrimitive2D (CDPL.Vis)
HashCodeCalculator.DefAtomHashSeedFunctor (CDPL.Chem)	LayoutStyle (CDPL.Vis)	u
HashCodeCalculator.DefBondHashSeedFunctor (CDPL.Chem)	Line2D (CDPL.Vis)
DataFormat (CDPL.ConfGen)	LinePrimitive2D (CDPL.Vis)	UInt64AtomFunctor (CDPL.Chem)
DGConstraintGenerator (CDPL.ConfGen)	LineSegmentListPrimitive2D (CDPL.Vis)	UInt64AtomMolecularGraphFunctor (CDPL.Chem)
DGConstraintGeneratorSettings (CDPL.ConfGen)	Pen.LineStyle (CDPL.Vis)	UInt64BondFunctor (CDPL.Chem)
DGStructureGenerator (CDPL.ConfGen)	m	UFFAtomType (CDPL.ForceField)
DGStructureGeneratorSettings (CDPL.ConfGen)		UFFAtomTypePropertyTable (CDPL.ForceField)
CircularFingerprintGenerator.DefAtomIdentifierFunctor (CDPL.Descr)	MMTFBZ2MolecularGraphOutputHandler (CDPL.Biomol)	ULHomogenousCoordsAdapter (CDPL.Math)
CircularFingerprintGenerator.DefBondIdentifierFunctor (CDPL.Descr)	MMTFBZ2MolecularGraphWriter (CDPL.Biomol)	ULIdentityMatrix (CDPL.Math)
PathFingerprintGenerator.DefAtomDescriptorFunctor (CDPL.Descr)	MMTFBZ2MoleculeInputHandler (CDPL.Biomol)	ULMatrix (CDPL.Math)
PathFingerprintGenerator.DefBondDescriptorFunctor (CDPL.Descr)	MMTFBZ2MoleculeReader (CDPL.Biomol)	ULMatrixColumn (CDPL.Math)
DoubleVector3DFeatureFunctor (CDPL.GRAIL)	MMTFGZMolecularGraphOutputHandler (CDPL.Biomol)	ULMatrixExpression (CDPL.Math)
DataFormat (CDPL.Grid)	MMTFGZMolecularGraphWriter (CDPL.Biomol)	ULMatrixRange (CDPL.Math)
DRegularGrid (CDPL.Grid)	MMTFGZMoleculeInputHandler (CDPL.Biomol)	ULMatrixRow (CDPL.Math)
DRegularGridInputHandler (CDPL.Grid)	MMTFGZMoleculeReader (CDPL.Biomol)	ULMatrixSlice (CDPL.Math)
DRegularGridIOManager (CDPL.Grid)	MMTFMolecularGraphOutputHandler (CDPL.Biomol)	ULMatrixTranspose (CDPL.Math)
DRegularGridOutputHandler (CDPL.Grid)	MMTFMolecularGraphWriter (CDPL.Biomol)	ULQuaternion (CDPL.Math)
DRegularGridReader (CDPL.Grid)	MMTFMoleculeInputHandler (CDPL.Biomol)	ULQuaternionExpression (CDPL.Math)
DRegularGridReaderBase (CDPL.Grid)	MMTFMoleculeReader (CDPL.Biomol)	ULQuaternionVectorAdapter (CDPL.Math)
DRegularGridSet (CDPL.Grid)	MolecularGraphPointerStringFunctor (CDPL.Biomol)	ULRealQuaternion (CDPL.Math)
DRegularGridSetInputHandler (CDPL.Grid)	MolecularGraphProperty (CDPL.Biomol)	ULRotationMatrix (CDPL.Math)
DRegularGridSetIOManager (CDPL.Grid)	MolecularGraphPropertyDefault (CDPL.Biomol)	ULScalarMatrix (CDPL.Math)
DRegularGridSetOutputHandler (CDPL.Grid)	MatchConstraint (CDPL.Chem)	ULScalarVector (CDPL.Math)
DRegularGridSetReader (CDPL.Grid)	MatchConstraintList (CDPL.Chem)	ULScalingMatrix (CDPL.Math)
DRegularGridSetReaderBase (CDPL.Grid)	MaxCommonAtomSubstructureSearch (CDPL.Chem)	ULTranslationMatrix (CDPL.Math)
DRegularGridSetWriter (CDPL.Grid)	MaxCommonBondSubstructureSearch (CDPL.Chem)	ULUnitVector (CDPL.Math)
DRegularGridSetWriterBase (CDPL.Grid)	MDLDataFormatVersion (CDPL.Chem)	ULVector (CDPL.Math)
DRegularGridWriter (CDPL.Grid)	MDLParity (CDPL.Chem)	ULVectorExpression (CDPL.Math)
DRegularGridWriterBase (CDPL.Grid)	MOL2BZ2MolecularGraphOutputHandler (CDPL.Chem)	ULVectorQuaternionAdapter (CDPL.Math)
DSpatialGrid (CDPL.Grid)	MOL2BZ2MolecularGraphWriter (CDPL.Chem)	ULVectorRange (CDPL.Math)
DGrid (CDPL.Math)	MOL2BZ2MoleculeInputHandler (CDPL.Chem)	ULVectorSlice (CDPL.Math)
DGridExpression (CDPL.Math)	MOL2BZ2MoleculeReader (CDPL.Chem)	ULZeroMatrix (CDPL.Math)
DHomogenousCoordsAdapter (CDPL.Math)	MOL2ChargeType (CDPL.Chem)	ULZeroVector (CDPL.Math)
DIdentityMatrix (CDPL.Math)	MOL2GZMolecularGraphOutputHandler (CDPL.Chem)	UnitLower (CDPL.Math)
DKabschAlgorithm (CDPL.Math)	MOL2GZMolecularGraphWriter (CDPL.Chem)	UnitUpper (CDPL.Math)
DMatrix (CDPL.Math)	MOL2GZMoleculeInputHandler (CDPL.Chem)	Upper (CDPL.Math)
DMatrixColumn (CDPL.Math)	MOL2GZMoleculeReader (CDPL.Chem)	UIArray (CDPL.Util)
DMatrixExpression (CDPL.Math)	MOL2MolecularGraphOutputHandler (CDPL.Chem)	v
DMatrixRange (CDPL.Math)	MOL2MolecularGraphWriter (CDPL.Chem)
DMatrixRow (CDPL.Math)	MOL2MoleculeInputHandler (CDPL.Chem)	ValueError (CDPL.Base)
DMatrixSlice (CDPL.Math)	MOL2MoleculeReader (CDPL.Chem)	VoidDataIOBaseFunctor (CDPL.Base)
DMatrixTranspose (CDPL.Math)	MOL2MoleculeType (CDPL.Chem)	VoidFunctor (CDPL.Base)
DMLRModel (CDPL.Math)	MolecularGraph (CDPL.Chem)	VoidLookupKeyAnyFunctor (CDPL.Base)
DoubleDVector2Functor (CDPL.Math)	MolecularGraphComponentGroupingMatchExpression (CDPL.Chem)	VoidLookupKeyFunctor (CDPL.Base)
DoubleDVectorFunctor (CDPL.Math)	MolecularGraphInputHandler (CDPL.Chem)	Vector2DAtomFunctor (CDPL.Chem)
DoubleVector2DArray2Functor (CDPL.Math)	MolecularGraphIOManager (CDPL.Chem)	Vector3DEntity3DFunctor (CDPL.Chem)
DoubleVector2DArrayFunctor (CDPL.Math)	MolecularGraphMatchConstraint (CDPL.Chem)	VoidMolecularGraphFunctor (CDPL.Chem)
DoubleVector3DArray2Functor (CDPL.Math)	MolecularGraphMatchExpression (CDPL.Chem)	VoidMoleculeMolecularGraphFunctor (CDPL.Chem)
DoubleVector3DArrayFunctor (CDPL.Math)	MolecularGraphMatchExpressionList (CDPL.Chem)	VoidPharmacophoreFunctor (CDPL.GRAIL)
DQuaternion (CDPL.Math)	MolecularGraphOutputHandler (CDPL.Chem)	Vector2D (CDPL.Math)
DQuaternionExpression (CDPL.Math)	MolecularGraphProperty (CDPL.Chem)	Vector2DArray (CDPL.Math)
DQuaternionVectorAdapter (CDPL.Math)	MolecularGraphPropertyDefault (CDPL.Chem)	Vector2DArrayAlignmentCalculator (CDPL.Math)
DRealQuaternion (CDPL.Math)	MolecularGraphWriter (CDPL.Chem)	Vector2DArrayBFGSMinimizer (CDPL.Math)
DRegularSpatialGrid (CDPL.Math)	MolecularGraphWriterBase (CDPL.Chem)	Vector2F (CDPL.Math)
DRegularSpatialGrid.DataMode (CDPL.Math)	Molecule (CDPL.Chem)	Vector2FArray (CDPL.Math)
DRotationMatrix (CDPL.Math)	MoleculeInputHandler (CDPL.Chem)	Vector2FArrayAlignmentCalculator (CDPL.Math)
DScalarGrid (CDPL.Math)	MoleculeIOManager (CDPL.Chem)	Vector2FArrayBFGSMinimizer (CDPL.Math)
DScalarMatrix (CDPL.Math)	MoleculeOutputHandler (CDPL.Chem)	Vector2L (CDPL.Math)
DScalarVector (CDPL.Math)	MoleculeReader (CDPL.Chem)	Vector2LArray (CDPL.Math)
DScalingMatrix (CDPL.Math)	MoleculeReaderBase (CDPL.Chem)	Vector2UL (CDPL.Math)
DTranslationMatrix (CDPL.Math)	MolGraphMatchExpressionPtrMolGraphFunctor (CDPL.Chem)	Vector2ULArray (CDPL.Math)
DUnitVector (CDPL.Math)	MOLMolecularGraphOutputHandler (CDPL.Chem)	Vector3D (CDPL.Math)
DVector (CDPL.Math)	MOLMolecularGraphWriter (CDPL.Chem)	Vector3DArray (CDPL.Math)
DVectorBFGSMinimizer (CDPL.Math)	MOLMoleculeInputHandler (CDPL.Chem)	Vector3DArrayAlignmentCalculator (CDPL.Math)
DVectorExpression (CDPL.Math)	MOLMoleculeReader (CDPL.Chem)	Vector3DArrayBFGSMinimizer (CDPL.Math)
DVectorQuaternionAdapter (CDPL.Math)	MorganNumberingCalculator (CDPL.Chem)	Vector3F (CDPL.Math)
DVectorRange (CDPL.Math)	MultiConfMoleculeInputProcessor (CDPL.Chem)	Vector3FArray (CDPL.Math)
DVectorSlice (CDPL.Math)	TautomerGenerator.Mode (CDPL.Chem)	Vector3FArrayAlignmentCalculator (CDPL.Math)
DZeroGrid (CDPL.Math)	MolecularComplexityCalculator (CDPL.Descr)	Vector3FArrayBFGSMinimizer (CDPL.Math)
DZeroMatrix (CDPL.Math)	MoleculeAutoCorr2DDescriptorCalculator (CDPL.Descr)	Vector3L (CDPL.Math)
DZeroVector (CDPL.Math)	MoleculeAutoCorr2DDescriptorCalculator.Mode (CDPL.Descr)	Vector3LArray (CDPL.Math)
FRegularSpatialGrid.DataMode (CDPL.Math)	MoleculeAutoCorr3DDescriptorCalculator (CDPL.Descr)	Vector3UL (CDPL.Math)
DataFormat (CDPL.Pharm)	MoleculeRDFDescriptorCalculator (CDPL.Descr)	Vector3ULArray (CDPL.Math)
DefaultInteractionAnalyzer (CDPL.Pharm)	MMFF94AngleBendingInteraction (CDPL.ForceField)	Vector4D (CDPL.Math)
DefaultPharmacophoreGenerator (CDPL.Pharm)	MMFF94AngleBendingInteractionList (CDPL.ForceField)	Vector4F (CDPL.Math)
DoubleDouble2Functor (CDPL.Pharm)	MMFF94AngleBendingInteractionParameterizer (CDPL.ForceField)	Vector4L (CDPL.Math)
DoubleDoubleFunctor (CDPL.Pharm)	MMFF94AngleBendingParameterTable (CDPL.ForceField)	Vector4UL (CDPL.Math)
DoubleFeature2Functor (CDPL.Pharm)	MMFF94AromaticAtomTypeDefinitionTable (CDPL.ForceField)	Vector7D (CDPL.Math)
DoubleFeature2Matrix4DFunctor (CDPL.Pharm)	MMFF94AromaticSSSRSubset (CDPL.ForceField)	Vector7D (CDPL.Shape)
DoubleFeature2UIntFunctor (CDPL.Pharm)	MMFF94AtomChargeFunction (CDPL.ForceField)	VoidMolecularGraph2AlignmentResultFunctor (CDPL.Shape)
DoubleFeatureFunctor (CDPL.Pharm)	MMFF94AtomTypePropertyTable (CDPL.ForceField)	DG3DCoordinatesGenerator.VolumeConstraint (CDPL.Util)
DoubleSearchHitFunctor (CDPL.Pharm)	MMFF94AtomTyper (CDPL.ForceField)	DG3DCoordinatesGenerator.VolumeConstraintList (CDPL.Util)
DoubleAlignmentResultFunctor (CDPL.Shape)	MMFF94BondChargeIncrementTable (CDPL.ForceField)	View2D (CDPL.Vis)
DArray (CDPL.Util)	MMFF94BondStretchingInteraction (CDPL.ForceField)	x
DG2DCoordinatesGenerator (CDPL.Util)	MMFF94BondStretchingInteractionList (CDPL.ForceField)
DG2DCoordinatesGenerator.DistanceConstraint (CDPL.Util)	MMFF94BondStretchingInteractionParameterizer (CDPL.ForceField)	XYZBZ2MolecularGraphOutputHandler (CDPL.Chem)
DG2DCoordinatesGenerator.DistanceConstraintList (CDPL.Util)	MMFF94BondStretchingParameterTable (CDPL.ForceField)	XYZBZ2MolecularGraphWriter (CDPL.Chem)
DG3DCoordinatesGenerator (CDPL.Util)	MMFF94BondStretchingRuleParameterTable (CDPL.ForceField)	XYZBZ2MoleculeInputHandler (CDPL.Chem)
DG3DCoordinatesGenerator.DistanceConstraint (CDPL.Util)	MMFF94BondTypeIndexFunction (CDPL.ForceField)	XYZBZ2MoleculeReader (CDPL.Chem)
DG3DCoordinatesGenerator.DistanceConstraintList (CDPL.Util)	MMFF94BondTyper (CDPL.ForceField)	XYZGZMolecularGraphOutputHandler (CDPL.Chem)
DataFormat (CDPL.Vis)	MMFF94ChargeCalculator (CDPL.ForceField)	XYZGZMolecularGraphWriter (CDPL.Chem)
e	MMFF94DefaultStretchBendParameterTable (CDPL.ForceField)	XYZGZMoleculeInputHandler (CDPL.Chem)
	MMFF94ElectrostaticInteraction (CDPL.ForceField)	XYZGZMoleculeReader (CDPL.Chem)
Exception (CDPL.Base)	MMFF94ElectrostaticInteractionList (CDPL.ForceField)	XYZMolecularGraphOutputHandler (CDPL.Chem)
ResidueDictionary.Entry (CDPL.Biomol)	MMFF94ElectrostaticInteractionParameterizer (CDPL.ForceField)	XYZMolecularGraphWriter (CDPL.Chem)
AtomDictionary.Entry (CDPL.Chem)	MMFF94EnergyCalculator (CDPL.ForceField)	XYZMoleculeInputHandler (CDPL.Chem)
ElectronSystem (CDPL.Chem)	MMFF94FormalAtomChargeDefinitionTable (CDPL.ForceField)	XYZMoleculeReader (CDPL.Chem)
ElectronSystemList (CDPL.Chem)	MMFF94GradientCalculator (CDPL.ForceField)	XLogPCalculator (CDPL.MolProp)
Entity3D (CDPL.Chem)	MMFF94HeavyToHydrogenAtomTypeMap (CDPL.ForceField)	XBondAcceptorFeatureGenerator (CDPL.Pharm)
Entity3DContainer (CDPL.Chem)	MMFF94InteractionData (CDPL.ForceField)	XBondDonorFeatureGenerator (CDPL.Pharm)
Entity3DMapping (CDPL.Chem)	MMFF94InteractionParameterizer (CDPL.ForceField)	XBondingInteractionConstraint (CDPL.Pharm)
Entity3DProperty (CDPL.Chem)	MMFF94NumericAtomTypeFunction (CDPL.ForceField)	XBondingInteractionScore (CDPL.Pharm)
FragmentGenerator.ExcludePattern (CDPL.Chem)	MMFF94OutOfPlaneBendingInteraction (CDPL.ForceField)

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