| __getitem__(int idx) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| __init__() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| __init__(GaussianShapeFunction ref_func, int sym_class) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| __len__() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| align(GaussianShapeFunction func, int sym_class) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| calcColorOverlaps(bool calc) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| calcColorOverlaps() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| calcColorSelfOverlap(GaussianShapeFunction calc) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| calcSelfOverlap(GaussianShapeFunction calc) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| colorFilterFunction (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| colorMatchFunction (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| colorOverlaps (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| DEF_MAX_OPTIMIZATION_ITERATIONS (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| DEF_OPTIMIZATION_STOP_GRADIENT (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| defaultOverlapFunction (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| defaultStartGenerator (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| getColorFilterFunction() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getColorMatchFunction() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getDefaultOverlapFunction() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getDefaultStartGenerator() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getMaxNumOptimizationIterations() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getNumResults() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getObjectID() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getOptimizationStopGradient() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getOverlapFunction() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getReference() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getResult(int idx) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| getStartGenerator() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| greedyOpt (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| greedyOptimization(bool greedy) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| greedyOptimization() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| maxNumOptIterations (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| numResults (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| objectID (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| optimizeOverlap(bool optimize) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| optimizeOverlap() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| optOverlap (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| optStopGradient (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| overlapFunction (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| perfAlignment (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| performAlignment(bool perf_align) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| performAlignment() | CDPL.Shape.GaussianShapeFunctionAlignment | |
| reference (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
| setColorFilterFunction(BoolSizeTypeFunctor func) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setColorMatchFunction(Pharm.BoolSizeType2Functor func) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setMaxNumOptimizationIterations(int max_iter) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setOptimizationStopGradient(float grad_norm) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setOverlapFunction(GaussianShapeOverlapFunction func) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setReference(GaussianShapeFunction func, int sym_class) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setStartGenerator(GaussianShapeAlignmentStartGenerator gen) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setupAligned(GaussianShapeFunction func, Math.Matrix4D xform) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| setupReference(GaussianShapeFunction func, Math.Matrix4D xform) | CDPL.Shape.GaussianShapeFunctionAlignment | |
| startGenerator (defined in CDPL.Shape.GaussianShapeFunctionAlignment) | CDPL.Shape.GaussianShapeFunctionAlignment | static |
1.8.20
