| __getitem__(int idx) | CDPL.Shape.GaussianShapeAlignment | |
| __init__() | CDPL.Shape.GaussianShapeAlignment | |
| __init__(GaussianShape ref_shape) | CDPL.Shape.GaussianShapeAlignment | |
| __init__(GaussianShapeSet ref_shapes) | CDPL.Shape.GaussianShapeAlignment | |
| __len__() | CDPL.Shape.GaussianShapeAlignment | |
| addReferenceShape(GaussianShape shape, bool new_set=True) | CDPL.Shape.GaussianShapeAlignment | |
| addReferenceShapes(GaussianShapeSet shapes, bool new_set=True) | CDPL.Shape.GaussianShapeAlignment | |
| align(GaussianShape shape) | CDPL.Shape.GaussianShapeAlignment | |
| align(GaussianShapeSet shapes) | CDPL.Shape.GaussianShapeAlignment | |
| calcColorOverlaps(bool calc) | CDPL.Shape.GaussianShapeAlignment | |
| calcColorOverlaps() | CDPL.Shape.GaussianShapeAlignment | |
| calcColorSelfOverlaps(bool calc) | CDPL.Shape.GaussianShapeAlignment | |
| calcColorSelfOverlaps() | CDPL.Shape.GaussianShapeAlignment | |
| calcSelfOverlaps(bool calc) | CDPL.Shape.GaussianShapeAlignment | |
| calcSelfOverlaps() | CDPL.Shape.GaussianShapeAlignment | |
| clearReferenceShapes() (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | |
| colorFilterFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| colorMatchFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| colorOverlaps (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| colorSelfOverlaps (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| DEF_DISTANCE_CUTOFF (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| DEF_MAX_OPTIMIZATION_ITERATIONS (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| DEF_MAX_PRODUCT_ORDER (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| DEF_OPTIMIZATION_STOP_GRADIENT (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| DEF_RESULT_SELECTION_MODE (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| defaultOverlapFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| defaultStartGenerator (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| distCutoff (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| getColorFilterFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getColorMatchFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getDefaultOverlapFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getDefaultStartGenerator() | CDPL.Shape.GaussianShapeAlignment | |
| getDistanceCutoff() | CDPL.Shape.GaussianShapeAlignment | |
| getMaxNumOptimizationIterations() | CDPL.Shape.GaussianShapeAlignment | |
| getMaxOrder() | CDPL.Shape.GaussianShapeAlignment | |
| getNumReferenceShapes() | CDPL.Shape.GaussianShapeAlignment | |
| getNumResults() | CDPL.Shape.GaussianShapeAlignment | |
| getObjectID() | CDPL.Shape.GaussianShapeAlignment | |
| getOptimizationStopGradient() | CDPL.Shape.GaussianShapeAlignment | |
| getOverlapFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getReferenceShape(int idx) | CDPL.Shape.GaussianShapeAlignment | |
| getResult(int idx) | CDPL.Shape.GaussianShapeAlignment | |
| getResultCompareFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getResultSelectionMode() | CDPL.Shape.GaussianShapeAlignment | |
| getScoringFunction() | CDPL.Shape.GaussianShapeAlignment | |
| getStartGenerator() | CDPL.Shape.GaussianShapeAlignment | |
| greedyOpt (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| greedyOptimization(bool greedy) | CDPL.Shape.GaussianShapeAlignment | |
| greedyOptimization() | CDPL.Shape.GaussianShapeAlignment | |
| maxNumOptIterations (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| maxOrder (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| numReferenceShapes (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| numResults (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| objectID (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| optimizeOverlap(bool optimize) | CDPL.Shape.GaussianShapeAlignment | |
| optimizeOverlap() | CDPL.Shape.GaussianShapeAlignment | |
| optOverlap (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| optStopGradient (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| overlapFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| perfAlignment (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| performAlignment(bool perf_align) | CDPL.Shape.GaussianShapeAlignment | |
| performAlignment() | CDPL.Shape.GaussianShapeAlignment | |
| resultCompareFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| resultSelectionMode (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| scoringFunction (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| selfOverlaps (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
| setColorFilterFunction(BoolSizeTypeFunctor func) | CDPL.Shape.GaussianShapeAlignment | |
| setColorMatchFunction(Pharm.BoolSizeType2Functor func) | CDPL.Shape.GaussianShapeAlignment | |
| setDistanceCutoff(float cutoff) | CDPL.Shape.GaussianShapeAlignment | |
| setMaxNumOptimizationIterations(int max_iter) | CDPL.Shape.GaussianShapeAlignment | |
| setMaxOrder(int max_order) | CDPL.Shape.GaussianShapeAlignment | |
| setOptimizationStopGradient(float grad_norm) | CDPL.Shape.GaussianShapeAlignment | |
| setOverlapFunction(GaussianShapeOverlapFunction func) | CDPL.Shape.GaussianShapeAlignment | |
| setResultCompareFunction(BoolAlignmentResult2Functor func) | CDPL.Shape.GaussianShapeAlignment | |
| setResultSelectionMode(int mode) | CDPL.Shape.GaussianShapeAlignment | |
| setScoringFunction(DoubleAlignmentResultFunctor func) | CDPL.Shape.GaussianShapeAlignment | |
| setStartGenerator(GaussianShapeAlignmentStartGenerator gen) | CDPL.Shape.GaussianShapeAlignment | |
| startGenerator (defined in CDPL.Shape.GaussianShapeAlignment) | CDPL.Shape.GaussianShapeAlignment | static |
1.8.20
