CDPL::Biomol::ControlParameter Namespace Reference

Provides keys for built-in control-parameters. More...

Variables
CDPL_BIOMOL_API const Base::LookupKey	STRICT_ERROR_CHECKING
	Specifies whether non-fatal recoverable I/O errors should be ignored or cause an I/O operation to fail. More...
CDPL_BIOMOL_API const Base::LookupKey	CHECK_LINE_LENGTH
	Specifies whether to check if data lines exceed the maximum allowed line length when reading or writing data in PDB [PDB] format. More...
CDPL_BIOMOL_API const Base::LookupKey	PDB_RESIDUE_DICTIONARY
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES
CDPL_BIOMOL_API const Base::LookupKey	PDB_IGNORE_CONECT_RECORDS
CDPL_BIOMOL_API const Base::LookupKey	PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS
CDPL_BIOMOL_API const Base::LookupKey	PDB_IGNORE_FORMAL_CHARGE_FIELD
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_FORMAL_ATOM_CHARGES
CDPL_BIOMOL_API const Base::LookupKey	PDB_APPLY_DICT_ATOM_TYPES
CDPL_BIOMOL_API const Base::LookupKey	PDB_CALC_MISSING_FORMAL_CHARGES
CDPL_BIOMOL_API const Base::LookupKey	PDB_PERCEIVE_MISSING_BOND_ORDERS
CDPL_BIOMOL_API const Base::LookupKey	PDB_EVALUATE_MASTER_RECORD
CDPL_BIOMOL_API const Base::LookupKey	PDB_TRUNCATE_LINES
CDPL_BIOMOL_API const Base::LookupKey	PDB_WRITE_FORMAL_CHARGES
CDPL_BIOMOL_API const Base::LookupKey	PDB_WRITE_CONECT_RECORDS
CDPL_BIOMOL_API const Base::LookupKey	PDB_WRITE_CONECT_RECORDS_FOR_ALL_BONDS
CDPL_BIOMOL_API const Base::LookupKey	PDB_WRITE_CONECT_RECORDS_REFLECTING_BOND_ORDER
CDPL_BIOMOL_API const Base::LookupKey	PDB_FORMAT_VERSION
CDPL_BIOMOL_API const Base::LookupKey	COMBINE_INTERFERING_RESIDUE_COORDINATES

Detailed Description

Provides keys for built-in control-parameters.

Variable Documentation

STRICT_ERROR_CHECKING

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::STRICT_ERROR_CHECKING

extern

Specifies whether non-fatal recoverable I/O errors should be ignored or cause an I/O operation to fail.

If the control-parameter is set to true, not only severe errors cause an I/O operation to fail, but also non-fatal errors from which a recovery would be possible. If the control-parameter is set to false, I/O operations will proceed even if a non-fatal error has been detected.

Value Type: bool

CHECK_LINE_LENGTH

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::CHECK_LINE_LENGTH

extern

Specifies whether to check if data lines exceed the maximum allowed line length when reading or writing data in PDB [PDB] format.

If the control-parameter is set to true, the length of data lines that were read from or have to be written to data encoded in one of the above mentioned formats will be checked against the maximum allowed line length. Lines that exceeded the line length limit are considered as an error condition and cause the input or output operation to fail. If CHECK_LINE_LENGTH is false, the length of data lines will not be checked and has no impact on the success of the performed I/O operation.

Value Type: bool

PDB_RESIDUE_DICTIONARY

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_RESIDUE_DICTIONARY

extern

PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES

extern

PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES

extern

PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES

extern

PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES

extern

PDB_IGNORE_CONECT_RECORDS

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_IGNORE_CONECT_RECORDS

extern

PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS

extern

PDB_IGNORE_FORMAL_CHARGE_FIELD

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_IGNORE_FORMAL_CHARGE_FIELD

extern

PDB_APPLY_DICT_FORMAL_ATOM_CHARGES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_FORMAL_ATOM_CHARGES

extern

PDB_APPLY_DICT_ATOM_TYPES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_TYPES

extern

PDB_CALC_MISSING_FORMAL_CHARGES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_CALC_MISSING_FORMAL_CHARGES

extern

PDB_PERCEIVE_MISSING_BOND_ORDERS

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_PERCEIVE_MISSING_BOND_ORDERS

extern

PDB_EVALUATE_MASTER_RECORD

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_EVALUATE_MASTER_RECORD

extern

PDB_TRUNCATE_LINES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_TRUNCATE_LINES

extern

PDB_WRITE_FORMAL_CHARGES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_WRITE_FORMAL_CHARGES

extern

PDB_WRITE_CONECT_RECORDS

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_WRITE_CONECT_RECORDS

extern

PDB_WRITE_CONECT_RECORDS_FOR_ALL_BONDS

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_WRITE_CONECT_RECORDS_FOR_ALL_BONDS

extern

PDB_WRITE_CONECT_RECORDS_REFLECTING_BOND_ORDER

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_WRITE_CONECT_RECORDS_REFLECTING_BOND_ORDER

extern

PDB_FORMAT_VERSION

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::PDB_FORMAT_VERSION

extern

COMBINE_INTERFERING_RESIDUE_COORDINATES

CDPL_BIOMOL_API const Base::LookupKey CDPL::Biomol::ControlParameter::COMBINE_INTERFERING_RESIDUE_COORDINATES

extern