Chemical Data Processing Library C++ API - Version 1.4.0
Variables
CDPL::Biomol::ControlParameterDefault Namespace Reference

Provides default values for built-in control-parameters. More...

Variables

CDPL_BIOMOL_API const bool STRICT_ERROR_CHECKING
 Default setting (= false) for the control-parameter Biomol::ControlParameter::STRICT_ERROR_CHECKING. More...
 
CDPL_BIOMOL_API const bool CHECK_LINE_LENGTH
 Default setting (= false) for the control-parameter Biomol::ControlParameter::CHECK_LINE_LENGTH. More...
 
CDPL_BIOMOL_API const ResidueDictionary::SharedPointer RESIDUE_DICTIONARY
 Default value (= empty shared pointer) for the control-parameter Biomol::ControlParameter::RESIDUE_DICTIONARY (a nullptr selects the built-in default dictionary). More...
 
CDPL_BIOMOL_API const bool APPLY_DICT_FORMAL_CHARGES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::APPLY_DICT_FORMAL_CHARGES. More...
 
CDPL_BIOMOL_API const bool APPLY_DICT_ATOM_TYPES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::APPLY_DICT_ATOM_TYPES. More...
 
CDPL_BIOMOL_API const bool CALC_MISSING_FORMAL_CHARGES
 Default setting (= false) for the control-parameter Biomol::ControlParameter::CALC_MISSING_FORMAL_CHARGES. More...
 
CDPL_BIOMOL_API const bool PERCEIVE_MISSING_BOND_ORDERS
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PERCEIVE_MISSING_BOND_ORDERS. More...
 
CDPL_BIOMOL_API const bool COMBINE_INTERFERING_RESIDUE_COORDINATES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::COMBINE_INTERFERING_RESIDUE_COORDINATES. More...
 
CDPL_BIOMOL_API const bool PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES. More...
 
CDPL_BIOMOL_API const bool PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES. More...
 
CDPL_BIOMOL_API const bool PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES. More...
 
CDPL_BIOMOL_API const bool PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES. More...
 
CDPL_BIOMOL_API const bool PDB_IGNORE_CONECT_RECORDS
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_IGNORE_CONECT_RECORDS. More...
 
CDPL_BIOMOL_API const bool PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS. More...
 
CDPL_BIOMOL_API const bool PDB_IGNORE_FORMAL_CHARGE_FIELD
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_IGNORE_FORMAL_CHARGE_FIELD. More...
 
CDPL_BIOMOL_API const bool PDB_EVALUATE_MASTER_RECORD
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_EVALUATE_MASTER_RECORD. More...
 
CDPL_BIOMOL_API const bool PDB_TRUNCATE_LINES
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_TRUNCATE_LINES. More...
 
CDPL_BIOMOL_API const bool PDB_OUTPUT_FORMAL_CHARGES
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_FORMAL_CHARGES. More...
 
CDPL_BIOMOL_API const bool PDB_OUTPUT_CONECT_RECORDS
 Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS. More...
 
CDPL_BIOMOL_API const bool PDB_OUTPUT_CONECT_RECORDS_FOR_ALL_BONDS
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS_FOR_ALL_BONDS. More...
 
CDPL_BIOMOL_API const bool PDB_OUTPUT_CONECT_RECORDS_REFLECTING_BOND_ORDER
 Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS_REFLECTING_BOND_ORDER. More...
 
CDPL_BIOMOL_API const unsigned int PDB_FORMAT_VERSION
 Default value (= Biomol::PDBFormatVersion::V3) for the control-parameter Biomol::ControlParameter::PDB_FORMAT_VERSION. More...
 
CDPL_BIOMOL_API const bool MMCIF_APPLY_DICT_ATOM_BONDING
 Default setting (= true) for the control-parameter Biomol::ControlParameter::MMCIF_APPLY_DICT_ATOM_BONDING. More...
 
CDPL_BIOMOL_API const bool MMCIF_APPLY_DICT_BOND_ORDERS
 Default setting (= true) for the control-parameter Biomol::ControlParameter::MMCIF_APPLY_DICT_BOND_ORDERS. More...
 
CDPL_BIOMOL_API const bool MMCIF_OUTPUT_BIOPOLYMERS_AS_CHEM_COMP
 Default setting (= false) for the control-parameter Biomol::ControlParameter::MMCIF_OUTPUT_BIOPOLYMERS_AS_CHEM_COMP. More...
 
CDPL_BIOMOL_API const MMCIFDataProcessingFunction MMCIF_OUTPUT_DATA_POSTPROC_FUNCTION
 Default value (= empty function object) for the control-parameter Biomol::ControlParameter::MMCIF_OUTPUT_DATA_POSTPROC_FUNCTION. More...
 

Detailed Description

Provides default values for built-in control-parameters.

Variable Documentation

◆ STRICT_ERROR_CHECKING

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::STRICT_ERROR_CHECKING
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::STRICT_ERROR_CHECKING.

◆ CHECK_LINE_LENGTH

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::CHECK_LINE_LENGTH
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::CHECK_LINE_LENGTH.

◆ RESIDUE_DICTIONARY

CDPL_BIOMOL_API const ResidueDictionary::SharedPointer CDPL::Biomol::ControlParameterDefault::RESIDUE_DICTIONARY
extern

Default value (= empty shared pointer) for the control-parameter Biomol::ControlParameter::RESIDUE_DICTIONARY (a nullptr selects the built-in default dictionary).

Since
1.2

◆ APPLY_DICT_FORMAL_CHARGES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::APPLY_DICT_FORMAL_CHARGES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::APPLY_DICT_FORMAL_CHARGES.

Since
1.2

◆ APPLY_DICT_ATOM_TYPES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::APPLY_DICT_ATOM_TYPES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::APPLY_DICT_ATOM_TYPES.

Since
1.2

◆ CALC_MISSING_FORMAL_CHARGES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::CALC_MISSING_FORMAL_CHARGES
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::CALC_MISSING_FORMAL_CHARGES.

Since
1.2

◆ PERCEIVE_MISSING_BOND_ORDERS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PERCEIVE_MISSING_BOND_ORDERS
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PERCEIVE_MISSING_BOND_ORDERS.

Since
1.2

◆ COMBINE_INTERFERING_RESIDUE_COORDINATES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::COMBINE_INTERFERING_RESIDUE_COORDINATES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::COMBINE_INTERFERING_RESIDUE_COORDINATES.

◆ PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_NON_STD_RESIDUES.

◆ PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_ATOM_BONDING_TO_STD_RESIDUES.

◆ PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_NON_STD_RESIDUES.

◆ PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_APPLY_DICT_BOND_ORDERS_TO_STD_RESIDUES.

◆ PDB_IGNORE_CONECT_RECORDS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_IGNORE_CONECT_RECORDS
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_IGNORE_CONECT_RECORDS.

◆ PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_DEDUCE_BOND_ORDERS_FROM_CONECT_RECORDS.

◆ PDB_IGNORE_FORMAL_CHARGE_FIELD

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_IGNORE_FORMAL_CHARGE_FIELD
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_IGNORE_FORMAL_CHARGE_FIELD.

◆ PDB_EVALUATE_MASTER_RECORD

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_EVALUATE_MASTER_RECORD
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_EVALUATE_MASTER_RECORD.

◆ PDB_TRUNCATE_LINES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_TRUNCATE_LINES
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_TRUNCATE_LINES.

◆ PDB_OUTPUT_FORMAL_CHARGES

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_OUTPUT_FORMAL_CHARGES
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_FORMAL_CHARGES.

Since
1.2

◆ PDB_OUTPUT_CONECT_RECORDS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_OUTPUT_CONECT_RECORDS
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS.

Since
1.2

◆ PDB_OUTPUT_CONECT_RECORDS_FOR_ALL_BONDS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_OUTPUT_CONECT_RECORDS_FOR_ALL_BONDS
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS_FOR_ALL_BONDS.

Since
1.2

◆ PDB_OUTPUT_CONECT_RECORDS_REFLECTING_BOND_ORDER

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::PDB_OUTPUT_CONECT_RECORDS_REFLECTING_BOND_ORDER
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::PDB_OUTPUT_CONECT_RECORDS_REFLECTING_BOND_ORDER.

Since
1.2

◆ PDB_FORMAT_VERSION

CDPL_BIOMOL_API const unsigned int CDPL::Biomol::ControlParameterDefault::PDB_FORMAT_VERSION
extern

Default value (= Biomol::PDBFormatVersion::V3) for the control-parameter Biomol::ControlParameter::PDB_FORMAT_VERSION.

◆ MMCIF_APPLY_DICT_ATOM_BONDING

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::MMCIF_APPLY_DICT_ATOM_BONDING
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::MMCIF_APPLY_DICT_ATOM_BONDING.

Since
1.2

◆ MMCIF_APPLY_DICT_BOND_ORDERS

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::MMCIF_APPLY_DICT_BOND_ORDERS
extern

Default setting (= true) for the control-parameter Biomol::ControlParameter::MMCIF_APPLY_DICT_BOND_ORDERS.

Since
1.2

◆ MMCIF_OUTPUT_BIOPOLYMERS_AS_CHEM_COMP

CDPL_BIOMOL_API const bool CDPL::Biomol::ControlParameterDefault::MMCIF_OUTPUT_BIOPOLYMERS_AS_CHEM_COMP
extern

Default setting (= false) for the control-parameter Biomol::ControlParameter::MMCIF_OUTPUT_BIOPOLYMERS_AS_CHEM_COMP.

Since
1.2

◆ MMCIF_OUTPUT_DATA_POSTPROC_FUNCTION

CDPL_BIOMOL_API const MMCIFDataProcessingFunction CDPL::Biomol::ControlParameterDefault::MMCIF_OUTPUT_DATA_POSTPROC_FUNCTION
extern

Default value (= empty function object) for the control-parameter Biomol::ControlParameter::MMCIF_OUTPUT_DATA_POSTPROC_FUNCTION.

Since
1.2
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