cdpl_api_doc/c%2B%2B_api_doc/Biomol_8hpp_source.html

 /*

  * Biomol.hpp

  *

  * This file is part of the Chemical Data Processing Toolkit

  *

  * Copyright (C) 2003 Thomas Seidel <thomas.seidel@univie.ac.at>

  *

  * This library is free software; you can redistribute it and/or

  * modify it under the terms of the GNU Lesser General Public

  * License as published by the Free Software Foundation; either

  * version 2 of the License, or (at your option) any later version.

  *

  * This library is distributed in the hope that it will be useful,

  * but WITHOUT ANY WARRANTY; without even the implied warranty of

  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU

  * Lesser General Public License for more details.

  *

  * You should have received a copy of the GNU Lesser General Public License

  * along with this library; see the file COPYING. If not, write to

  * the Free Software Foundation, Inc., 59 Temple Place - Suite 330,

  * Boston, MA 02111-1307, USA.

  */


 #ifndef CDPL_BIOMOL_HPP

 #define CDPL_BIOMOL_HPP


 #include "CDPL/Biomol/PDBData.hpp"

 #include "CDPL/Biomol/MMCIFData.hpp"

 #include "CDPL/Biomol/AtomProperty.hpp"

 #include "CDPL/Biomol/MolecularGraphProperty.hpp"

 #include "CDPL/Biomol/AtomPropertyDefault.hpp"

 #include "CDPL/Biomol/MolecularGraphPropertyDefault.hpp"

 #include "CDPL/Biomol/AtomPropertyFlag.hpp"

 #include "CDPL/Biomol/PDBFormatVersion.hpp"

 #include "CDPL/Biomol/ResidueType.hpp"

 #include "CDPL/Biomol/ProcessingFlags.hpp"

 #include "CDPL/Biomol/DataFormat.hpp"

 #include "CDPL/Biomol/ControlParameter.hpp"

 #include "CDPL/Biomol/ControlParameterDefault.hpp"

 #include "CDPL/Biomol/ControlParameterFunctions.hpp"

 #include "CDPL/Biomol/MMCIFDataProcessingFunction.hpp"

 #include "CDPL/Biomol/PDBMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/PDBMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMTFMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMTFMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMCIFMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMCIFMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/PDBMoleculeReader.hpp"

 #include "CDPL/Biomol/PDBMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMTFMoleculeReader.hpp"

 #include "CDPL/Biomol/MMTFMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMCIFMoleculeReader.hpp"

 #include "CDPL/Biomol/MMCIFMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/HierarchyViewNode.hpp"

 #include "CDPL/Biomol/HierarchyViewModel.hpp"

 #include "CDPL/Biomol/HierarchyViewChain.hpp"

 #include "CDPL/Biomol/HierarchyViewFragment.hpp"

 #include "CDPL/Biomol/HierarchyView.hpp"

 #include "CDPL/Biomol/ResidueList.hpp"

 #include "CDPL/Biomol/ResidueDictionary.hpp"

 #include "CDPL/Biomol/AtomFunctions.hpp"

 #include "CDPL/Biomol/MolecularGraphFunctions.hpp"

 #include "CDPL/Biomol/MoleculeFunctions.hpp"

 #include "CDPL/Biomol/UtilityFunctions.hpp"

 #include "CDPL/Biomol/PDBGZMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/PDBGZMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMTFGZMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMTFGZMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMCIFGZMoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMCIFGZMolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/PDBBZ2MoleculeInputHandler.hpp"

 #include "CDPL/Biomol/PDBBZ2MolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMTFBZ2MoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMTFBZ2MolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/MMCIFBZ2MoleculeInputHandler.hpp"

 #include "CDPL/Biomol/MMCIFBZ2MolecularGraphOutputHandler.hpp"

 #include "CDPL/Biomol/PDBGZMoleculeReader.hpp"

 #include "CDPL/Biomol/PDBGZMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMTFGZMoleculeReader.hpp"

 #include "CDPL/Biomol/MMTFGZMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMCIFGZMoleculeReader.hpp"

 #include "CDPL/Biomol/MMCIFGZMolecularGraphWriter.hpp"

 #include "CDPL/Biomol/PDBBZ2MoleculeReader.hpp"

 #include "CDPL/Biomol/PDBBZ2MolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMTFBZ2MoleculeReader.hpp"

 #include "CDPL/Biomol/MMTFBZ2MolecularGraphWriter.hpp"

 #include "CDPL/Biomol/MMCIFBZ2MoleculeReader.hpp"

 #include "CDPL/Biomol/MMCIFBZ2MolecularGraphWriter.hpp"


 #endif // CDPL_BIOMOL_HPP

AtomFunctions.hpp
Declaration of functions that operate on Chem::Atom instances.

AtomPropertyDefault.hpp
Definition of constants in namespace CDPL::Biomol::AtomPropertyDefault.

AtomPropertyFlag.hpp
Definition of constants in namespace CDPL::Biomol::AtomPropertyFlag.

AtomProperty.hpp
Definition of constants in namespace CDPL::Biomol::AtomProperty.

ControlParameterDefault.hpp
Definition of constants in namespace CDPL::Biomol::ControlParameterDefault.

ControlParameterFunctions.hpp
Declaration of convenience functions for control-parameter handling.

ControlParameter.hpp
Definition of constants in namespace CDPL::Biomol::ControlParameter.

DataFormat.hpp
Provides the contents of namespace CDPL::Biomol::DataFormat.

MolecularGraphFunctions.hpp
Declaration of functions that operate on Chem::MolecularGraph instances.

MolecularGraphPropertyDefault.hpp
Definition of constants in namespace CDPL::Biomol::MolecularGraphPropertyDefault.

MolecularGraphProperty.hpp
Definition of constants in namespace CDPL::Biomol::MolecularGraphProperty.

MoleculeFunctions.hpp
Declaration of functions that operate on Chem::Molecule instances.

UtilityFunctions.hpp
Declaration of various utility functions.

HierarchyViewChain.hpp
Definition of the class CDPL::Biomol::HierarchyViewChain.

HierarchyViewFragment.hpp
Definition of the class CDPL::Biomol::HierarchyViewFragment.

HierarchyViewModel.hpp
Definition of the class CDPL::Biomol::HierarchyViewModel.

HierarchyViewNode.hpp
Definition of the class CDPL::Biomol::HierarchyViewNode.

HierarchyView.hpp
Definition of the class CDPL::Biomol::HierarchyView.

MMCIFBZ2MolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFBZ2MolecularGraphOutputHandler.

MMCIFBZ2MolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMCIFBZ2MolecularGraphWriter.

MMCIFBZ2MoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFBZ2MoleculeInputHandler.

MMCIFBZ2MoleculeReader.hpp
Definition of the class CDPL::Biomol::MMCIFBZ2MoleculeReader.

MMCIFDataProcessingFunction.hpp
Type definition of a generic wrapper class used to store a user-defined function for the processing o...

MMCIFData.hpp
Definition of the class CDPL::Biomol::MMCIFData.

MMCIFGZMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFGZMolecularGraphOutputHandler.

MMCIFGZMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMCIFGZMolecularGraphWriter.

MMCIFGZMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFGZMoleculeInputHandler.

MMCIFGZMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMCIFGZMoleculeReader.

MMCIFMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFMolecularGraphOutputHandler.

MMCIFMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMCIFMolecularGraphWriter.

MMCIFMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMCIFMoleculeInputHandler.

MMCIFMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMCIFMoleculeReader.

MMTFBZ2MolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MolecularGraphOutputHandler.

MMTFBZ2MolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MolecularGraphWriter.

MMTFBZ2MoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MoleculeInputHandler.

MMTFBZ2MoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MoleculeReader.

MMTFGZMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFGZMolecularGraphOutputHandler.

MMTFGZMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFGZMolecularGraphWriter.

MMTFGZMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFGZMoleculeInputHandler.

MMTFGZMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFGZMoleculeReader.

MMTFMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFMolecularGraphOutputHandler.

MMTFMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFMolecularGraphWriter.

MMTFMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFMoleculeInputHandler.

MMTFMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFMoleculeReader.

PDBBZ2MolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBBZ2MolecularGraphOutputHandler.

PDBBZ2MolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBBZ2MolecularGraphWriter.

PDBBZ2MoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBBZ2MoleculeInputHandler.

PDBBZ2MoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBBZ2MoleculeReader.

PDBData.hpp
Definition of the class CDPL::Biomol::PDBData.

PDBFormatVersion.hpp
Definition of constants in namespace CDPL::Biomol::PDBFormatVersion.

PDBGZMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBGZMolecularGraphOutputHandler.

PDBGZMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBGZMolecularGraphWriter.

PDBGZMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBGZMoleculeInputHandler.

PDBGZMoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBGZMoleculeReader.

PDBMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBMolecularGraphOutputHandler.

PDBMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBMolecularGraphWriter.

PDBMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBMoleculeInputHandler.

PDBMoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBMoleculeReader.

ProcessingFlags.hpp
Definition of flags for serial and residue sequence number processing.

ResidueDictionary.hpp
Definition of the class CDPL::Biomol::ResidueDictionary.

ResidueList.hpp
Definition of the class CDPL::Biomol::ResidueList.

ResidueType.hpp
Definition of constants in namespace CDPL::Biomol::ResidueType.