CDPL.Biomol.HierarchyViewModel Member List

This is the complete list of members for CDPL.Biomol.HierarchyViewModel, including all inherited members.

__contains__(Atom atom)	CDPL.Chem.Fragment
__contains__(Bond bond)	CDPL.Chem.Fragment
__contains__(Base.LookupKey key)	CDPL.Chem.Fragment
CDPL::Base::PropertyContainer.__contains__(LookupKey key)	CDPL.Base.PropertyContainer
__delitem__(Base.LookupKey key)	CDPL.Chem.Fragment
CDPL::Base::PropertyContainer.__delitem__(LookupKey key)	CDPL.Base.PropertyContainer
__getitem__(int idx)	CDPL.Biomol.HierarchyViewModel
CDPL::Biomol::HierarchyViewNode.__getitem__(Base.LookupKey key)	CDPL.Chem.Fragment
CDPL::Base::PropertyContainer.__getitem__(LookupKey key)	CDPL.Base.PropertyContainer
__iadd__(MolecularGraph molgraph)	CDPL.Chem.Fragment
__init__()	CDPL.Chem.Fragment
__init__(Fragment frag)	CDPL.Chem.Fragment
__init__(MolecularGraph molgraph)	CDPL.Chem.Fragment
__isub__(MolecularGraph molgraph)	CDPL.Chem.Fragment
__len__()	CDPL.Biomol.HierarchyViewModel
__setitem__(Base.LookupKey key, Base.Any value)	CDPL.Chem.Fragment
CDPL::Base::PropertyContainer.__setitem__(LookupKey key, Any value)	CDPL.Base.PropertyContainer
addAtom(Atom atom)	CDPL.Chem.Fragment
addBond(Bond bond)	CDPL.Chem.Fragment
addProperties(PropertyContainer cntnr)	CDPL.Base.PropertyContainer
assign(Fragment frag)	CDPL.Chem.Fragment
assign(MolecularGraph molgraph)	CDPL.Chem.Fragment
atoms (defined in CDPL.Chem.Fragment)	CDPL.Chem.Fragment	static
bonds (defined in CDPL.Chem.Fragment)	CDPL.Chem.Fragment	static
clear()	CDPL.Chem.Fragment
clearProperties()	CDPL.Base.PropertyContainer
clone()	CDPL.Chem.MolecularGraph
containsAtom(Atom atom)	CDPL.Chem.MolecularGraph
containsBond(Bond bond)	CDPL.Chem.MolecularGraph
copyProperties(PropertyContainer cntnr)	CDPL.Base.PropertyContainer
getAtom(int idx)	CDPL.Chem.MolecularGraph
getAtomIndex(Atom atom)	CDPL.Chem.MolecularGraph
getAtoms()	CDPL.Chem.Fragment
getBond(int idx)	CDPL.Chem.MolecularGraph
getBondIndex(Bond bond)	CDPL.Chem.MolecularGraph
getBonds()	CDPL.Chem.Fragment
getChain(int idx)	CDPL.Biomol.HierarchyViewModel
getChainByID(str id)	CDPL.Biomol.HierarchyViewModel
getEntity(int idx)	CDPL.Chem.MolecularGraph
getNumAtoms()	CDPL.Chem.MolecularGraph
getNumBonds()	CDPL.Chem.MolecularGraph
getNumChains()	CDPL.Biomol.HierarchyViewModel
getNumEntities()	CDPL.Chem.MolecularGraph
getNumProperties()	CDPL.Base.PropertyContainer
CDPL::Chem::AtomContainer.getObjectID()	CDPL.Chem.Entity3DContainer
CDPL::Chem::BondContainer.getObjectID()	CDPL.Chem.BondContainer
CDPL::Base::PropertyContainer.getObjectID()	CDPL.Base.PropertyContainer
getProperties()	CDPL.Base.PropertyContainer
getProperty(LookupKey key, bool throw_=False)	CDPL.Base.PropertyContainer
getPropertyKeys()	CDPL.Base.PropertyContainer
getPropertyOrDefault(LookupKey key, Any def_value)	CDPL.Base.PropertyContainer
getPropertyValues()	CDPL.Base.PropertyContainer
getResidues()	CDPL.Biomol.HierarchyViewNode
hasChainWithID(str id)	CDPL.Biomol.HierarchyViewModel
isPropertySet(LookupKey key)	CDPL.Base.PropertyContainer
numAtoms (defined in CDPL.Chem.AtomContainer)	CDPL.Chem.AtomContainer	static
numBonds (defined in CDPL.Chem.BondContainer)	CDPL.Chem.BondContainer	static
numChains (defined in CDPL.Biomol.HierarchyViewModel)	CDPL.Biomol.HierarchyViewModel	static
numEntities (defined in CDPL.Chem.Entity3DContainer)	CDPL.Chem.Entity3DContainer	static
numProperties (defined in CDPL.Base.PropertyContainer)	CDPL.Base.PropertyContainer	static
objectID (defined in CDPL.Chem.Entity3DContainer)	CDPL.Chem.Entity3DContainer	static
objectID (defined in CDPL.Chem.BondContainer)	CDPL.Chem.BondContainer	static
objectID (defined in CDPL.Base.PropertyContainer)	CDPL.Base.PropertyContainer	static
orderAtoms(ForceField.InteractionFilterFunction2 func)	CDPL.Chem.MolecularGraph
orderBonds(BoolBond2Functor func)	CDPL.Chem.MolecularGraph
properties (defined in CDPL.Base.PropertyContainer)	CDPL.Base.PropertyContainer	static
propertyKeys (defined in CDPL.Base.PropertyContainer)	CDPL.Base.PropertyContainer	static
propertyValues (defined in CDPL.Base.PropertyContainer)	CDPL.Base.PropertyContainer	static
removeAtom(int idx)	CDPL.Chem.Fragment
removeAtom(Atom atom)	CDPL.Chem.Fragment
removeBond(int idx)	CDPL.Chem.Fragment
removeBond(Bond bond)	CDPL.Chem.Fragment
removeProperty(LookupKey key)	CDPL.Base.PropertyContainer
reserveMemoryForAtoms(int num_atoms)	CDPL.Chem.Fragment
reserveMemoryForBonds(int num_bonds)	CDPL.Chem.Fragment
residues (defined in CDPL.Biomol.HierarchyViewNode)	CDPL.Biomol.HierarchyViewNode	static
setProperty(LookupKey key, Any value)	CDPL.Base.PropertyContainer
swap(Fragment frag)	CDPL.Chem.Fragment
CDPL::Chem::MolecularGraph.swap(PropertyContainer cntnr)	CDPL.Base.PropertyContainer