| addExcludePattern(const Chem::MolecularGraph::SharedPointer &pattern) | CDPL::Pharm::PatternBasedFeatureGenerator | |
| addIncludePattern(const Chem::MolecularGraph::SharedPointer &pattern, unsigned int type, double tol, unsigned int geom, double length=1.0) | CDPL::Pharm::PatternBasedFeatureGenerator | |
| addNonPatternFeatures(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::PatternBasedFeatureGenerator | inlineprotectedvirtual |
| AtomList typedef | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| calcCentroid(const AtomList &, Math::Vector3D &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| calcPlaneFeatureOrientation(const AtomList &, Math::Vector3D &, Math::Vector3D &) | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| calcVecFeatureOrientation(const AtomList &, const AtomList &, Math::Vector3D &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| clearExcludePatterns() | CDPL::Pharm::PatternBasedFeatureGenerator | |
| clearIncludePatterns() | CDPL::Pharm::PatternBasedFeatureGenerator | |
| clone() const | CDPL::Pharm::PatternBasedFeatureGenerator | virtual |
| FEATURE_ATOM_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator | |
| FeatureGenerator() | CDPL::Pharm::FeatureGenerator | |
| FeatureGenerator(const FeatureGenerator &gen) | CDPL::Pharm::FeatureGenerator | protected |
| generate(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::PatternBasedFeatureGenerator | virtual |
| GEOM_REF_ATOM1_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator | |
| GEOM_REF_ATOM2_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator | |
| getAtom3DCoordinatesFunction() const | CDPL::Pharm::FeatureGenerator | |
| isContainedInExMatchList(const Util::BitSet &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| isContainedInIncMatchList(const Util::BitSet &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected |
| operator=(const PatternBasedFeatureGenerator &gen) | CDPL::Pharm::PatternBasedFeatureGenerator | |
| CDPL::Pharm::FeatureGenerator::operator=(const FeatureGenerator &gen) | CDPL::Pharm::FeatureGenerator | protected |
| PatternAtomLabelFlag enum name | CDPL::Pharm::PatternBasedFeatureGenerator | |
| PatternBasedFeatureGenerator() | CDPL::Pharm::PatternBasedFeatureGenerator | |
| PatternBasedFeatureGenerator(const PatternBasedFeatureGenerator &gen) | CDPL::Pharm::PatternBasedFeatureGenerator | |
| POS_REF_ATOM_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator | |
| setAtom3DCoordinatesFunction(const Chem::Atom3DCoordinatesFunction &func) | CDPL::Pharm::FeatureGenerator | virtual |
| SharedPointer typedef | CDPL::Pharm::PatternBasedFeatureGenerator | |
| XBondDonorFeatureGenerator() | CDPL::Pharm::XBondDonorFeatureGenerator | |
| XBondDonorFeatureGenerator(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::XBondDonorFeatureGenerator | |
| ~FeatureGenerator() | CDPL::Pharm::FeatureGenerator | inlinevirtual |
| ~PatternBasedFeatureGenerator() | CDPL::Pharm::PatternBasedFeatureGenerator | virtual |