__call__(Math.Vector3DArray coords) | CDPL.ForceField.MMFF94GradientCalculator | |
__call__(Math.Vector3DArray coords, Math.Vector3DArray grad) | CDPL.ForceField.MMFF94GradientCalculator | |
__init__() | CDPL.ForceField.MMFF94GradientCalculator | |
__init__(MMFF94GradientCalculator calc) | CDPL.ForceField.MMFF94GradientCalculator | |
__init__(MMFF94InteractionData ia_data, int num_atoms) | CDPL.ForceField.MMFF94GradientCalculator | |
angleBendingEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
assign(MMFF94GradientCalculator calc) | CDPL.ForceField.MMFF94GradientCalculator | |
bondStretchingEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
electrostaticEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
enabledInteractionTypes (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
fixedAtomMask (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
getAngleBendingEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getBondStretchingEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getElectrostaticEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getEnabledInteractionTypes() | CDPL.ForceField.MMFF94GradientCalculator | |
getFixedAtomMask() | CDPL.ForceField.MMFF94GradientCalculator | |
getObjectID() | CDPL.ForceField.MMFF94GradientCalculator | |
getOutOfPlaneBendingEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getStretchBendEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getTorsionEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getTotalEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
getVanDerWaalsEnergy() | CDPL.ForceField.MMFF94GradientCalculator | |
objectID (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
outOfPlaneBendingEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
resetFixedAtomMask() (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | |
setEnabledInteractionTypes(int types) | CDPL.ForceField.MMFF94GradientCalculator | |
setFixedAtomMask(Util.BitSet mask) | CDPL.ForceField.MMFF94GradientCalculator | |
setup(MMFF94InteractionData ia_data, int num_atoms) | CDPL.ForceField.MMFF94GradientCalculator | |
stretchBendEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
torsionEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
totalEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |
vanDerWaalsEnergy (defined in CDPL.ForceField.MMFF94GradientCalculator) | CDPL.ForceField.MMFF94GradientCalculator | static |