__init__() | CDPL.ConfGen.ConformerGeneratorSettings | |
__init__(ConformerGeneratorSettings settings) | CDPL.ConfGen.ConformerGeneratorSettings | |
addEnergyWindowRange(int num_rot_bonds, float win_size) | CDPL.ConfGen.ConformerGeneratorSettings | |
addMaxNumOutputConformersRange(int num_rot_bonds, int max_num) | CDPL.ConfGen.ConformerGeneratorSettings | |
addMinRMSDRange(int num_rot_bonds, float min_rmsd) | CDPL.ConfGen.ConformerGeneratorSettings | |
assign(ConformerGeneratorSettings settings) | CDPL.ConfGen.ConformerGeneratorSettings | |
clearEnergyWindowRanges() (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | |
clearMaxNumOutputConformersRanges() (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | |
clearMinRMSDRanges() (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | |
convCheckCycleSize (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
DEFAULT (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
dielectricConstant (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
distanceExponent (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
energyWindow (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
enumerateRings(bool enumerate) | CDPL.ConfGen.ConformerGeneratorSettings | |
enumerateRings() | CDPL.ConfGen.ConformerGeneratorSettings | |
enumRings (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
forceFieldTypeStochastic (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
forceFieldTypeSystematic (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
fragmentBuildSettings (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
genCoordsFromScratch (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
generateCoordinatesFromScratch(bool generate) | CDPL.ConfGen.ConformerGeneratorSettings | |
generateCoordinatesFromScratch() | CDPL.ConfGen.ConformerGeneratorSettings | |
getConvergenceCheckCycleSize() | CDPL.ConfGen.ConformerGeneratorSettings | |
getDielectricConstant() | CDPL.ConfGen.ConformerGeneratorSettings | |
getDistanceExponent() | CDPL.ConfGen.ConformerGeneratorSettings | |
getEnergyWindow() | CDPL.ConfGen.ConformerGeneratorSettings | |
getEnergyWindow(int num_rot_bonds) | CDPL.ConfGen.ConformerGeneratorSettings | |
getForceFieldTypeStochastic() | CDPL.ConfGen.ConformerGeneratorSettings | |
getForceFieldTypeSystematic() | CDPL.ConfGen.ConformerGeneratorSettings | |
getFragmentBuildSettings() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMacrocycleRotorBondCountThreshold() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxNumOutputConformers() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxNumOutputConformers(int num_rot_bonds) | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxNumRefinementIterations() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxNumSampledConformers() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxPoolSize() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMaxRotatableBondCount() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMinRMSD() | CDPL.ConfGen.ConformerGeneratorSettings | |
getMinRMSD(int num_rot_bonds) | CDPL.ConfGen.ConformerGeneratorSettings | |
getNitrogenEnumerationMode() | CDPL.ConfGen.ConformerGeneratorSettings | |
getObjectID() | CDPL.ConfGen.ConformerGeneratorSettings | |
getRefinementTolerance() | CDPL.ConfGen.ConformerGeneratorSettings | |
getSamplingMode() | CDPL.ConfGen.ConformerGeneratorSettings | |
getTimeout() | CDPL.ConfGen.ConformerGeneratorSettings | |
includeInputCoordinates(bool include) | CDPL.ConfGen.ConformerGeneratorSettings | |
includeInputCoordinates() | CDPL.ConfGen.ConformerGeneratorSettings | |
includeInputCoords (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
LARGE_SET_DENSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
LARGE_SET_DIVERSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
macrocycleRotorBondCountThresh (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
maxNumOutputConformers (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
maxNumRefinementIterations (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
maxNumSampledConformers (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
maxPoolSize (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
maxRotatableBondCount (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
MEDIUM_SET_DENSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
MEDIUM_SET_DIVERSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
minRMSD (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
nitrogenEnumMode (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
objectID (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
refinementTolerance (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
sampleAngleToleranceRanges(bool sample) | CDPL.ConfGen.ConformerGeneratorSettings | |
sampleAngleToleranceRanges() | CDPL.ConfGen.ConformerGeneratorSettings | |
sampleAngleTolRanges (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
sampleHetAtomHydrogens (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
sampleHeteroAtomHydrogens(bool sample) | CDPL.ConfGen.ConformerGeneratorSettings | |
sampleHeteroAtomHydrogens() | CDPL.ConfGen.ConformerGeneratorSettings | |
samplingMode (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
setConvergenceCheckCycleSize(int size) | CDPL.ConfGen.ConformerGeneratorSettings | |
setDielectricConstant(float de_const) | CDPL.ConfGen.ConformerGeneratorSettings | |
setDistanceExponent(float dist_expo) | CDPL.ConfGen.ConformerGeneratorSettings | |
setEnergyWindow(float win_size) | CDPL.ConfGen.ConformerGeneratorSettings | |
setForceFieldTypeStochastic(int type) | CDPL.ConfGen.ConformerGeneratorSettings | |
setForceFieldTypeSystematic(int type) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMacrocycleRotorBondCountThreshold(int max_size) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMaxNumOutputConformers(int max_num) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMaxNumRefinementIterations(int max_num) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMaxNumSampledConformers(int max_num) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMaxPoolSize(int max_size) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMaxRotatableBondCount(int max_count) | CDPL.ConfGen.ConformerGeneratorSettings | |
setMinRMSD(float min_rmsd) | CDPL.ConfGen.ConformerGeneratorSettings | |
setNitrogenEnumerationMode(int mode) | CDPL.ConfGen.ConformerGeneratorSettings | |
setRefinementStopGradient(float tol) | CDPL.ConfGen.ConformerGeneratorSettings | |
setSamplingMode(int mode) | CDPL.ConfGen.ConformerGeneratorSettings | |
setTimeout(int mil_secs) | CDPL.ConfGen.ConformerGeneratorSettings | |
SMALL_SET_DENSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
SMALL_SET_DIVERSE (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
strictForceFieldParam (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |
strictForceFieldParameterization(bool strict) | CDPL.ConfGen.ConformerGeneratorSettings | |
strictForceFieldParameterization() | CDPL.ConfGen.ConformerGeneratorSettings | |
timeout (defined in CDPL.ConfGen.ConformerGeneratorSettings) | CDPL.ConfGen.ConformerGeneratorSettings | static |