| __init__() | CDPL.Chem.TopologicalAtomAlignment | |
| __init__(TopologicalAtomAlignment alignment) | CDPL.Chem.TopologicalAtomAlignment | |
| addEntity(Atom entity, bool first_set) | CDPL.Chem.TopologicalAtomAlignment | |
| assign(TopologicalAtomAlignment alignment) | CDPL.Chem.TopologicalAtomAlignment | |
| clearEntities(bool first_set) | CDPL.Chem.TopologicalAtomAlignment | |
| entityMatchFunction (defined in CDPL.Chem.TopologicalAtomAlignment) | CDPL.Chem.TopologicalAtomAlignment | static |
| entityPairMatchFunction (defined in CDPL.Chem.TopologicalAtomAlignment) | CDPL.Chem.TopologicalAtomAlignment | static |
| getEntities(bool first_set) | CDPL.Chem.TopologicalAtomAlignment | |
| getEntity(int idx, bool first_set) | CDPL.Chem.TopologicalAtomAlignment | |
| getEntityMatchFunction() | CDPL.Chem.TopologicalAtomAlignment | |
| getEntityPairMatchFunction() | CDPL.Chem.TopologicalAtomAlignment | |
| getNumEntities(bool first_set) | CDPL.Chem.TopologicalAtomAlignment | |
| getObjectID() | CDPL.Chem.TopologicalAtomAlignment | |
| nextAlignment(Util.STPairArray mapping) | CDPL.Chem.TopologicalAtomAlignment | |
| objectID (defined in CDPL.Chem.TopologicalAtomAlignment) | CDPL.Chem.TopologicalAtomAlignment | static |
| reset() (defined in CDPL.Chem.TopologicalAtomAlignment) | CDPL.Chem.TopologicalAtomAlignment | |
| setEntityMatchFunction(ForceField.InteractionFilterFunction2 func) | CDPL.Chem.TopologicalAtomAlignment | |
| setEntityPairMatchFunction(ForceField.InteractionFilterFunction4 func) | CDPL.Chem.TopologicalAtomAlignment | |
1.8.20
