| __init__() | CDPL.Chem.SpatialAtomAlignment | |
| __init__(SpatialAtomAlignment alignment) | CDPL.Chem.SpatialAtomAlignment | |
| addEntity(Atom entity, bool first_set) | CDPL.Chem.SpatialAtomAlignment | |
| assign(SpatialAtomAlignment alignment) | CDPL.Chem.SpatialAtomAlignment | |
| clearEntities(bool first_set) | CDPL.Chem.SpatialAtomAlignment | |
| entityCoordsFunction (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| entityMatchFunction (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| entityPairMatchFunction (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| entityWeightFunction (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| exhaustiveSearch (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| exhaustiveSearchPerformed() | CDPL.Chem.SpatialAtomAlignment | |
| getEntities(bool first_set) | CDPL.Chem.SpatialAtomAlignment | |
| getEntity(int idx, bool first_set) | CDPL.Chem.SpatialAtomAlignment | |
| getEntity3DCoordinatesFunction() | CDPL.Chem.SpatialAtomAlignment | |
| getEntityMatchFunction() | CDPL.Chem.SpatialAtomAlignment | |
| getEntityPairMatchFunction() | CDPL.Chem.SpatialAtomAlignment | |
| getEntityWeightFunction() | CDPL.Chem.SpatialAtomAlignment | |
| getMinTopologicalMappingSize() | CDPL.Chem.SpatialAtomAlignment | |
| getNumEntities(bool first_set) | CDPL.Chem.SpatialAtomAlignment | |
| getObjectID() | CDPL.Chem.SpatialAtomAlignment | |
| getTopAlignmentConstraintFunction() | CDPL.Chem.SpatialAtomAlignment | |
| getTopologicalMapping() | CDPL.Chem.SpatialAtomAlignment | |
| getTransform() | CDPL.Chem.SpatialAtomAlignment | |
| minTopologicalMappingSize (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| nextAlignment() | CDPL.Chem.SpatialAtomAlignment | |
| objectID (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| performExhaustiveSearch(bool exhaustive) | CDPL.Chem.SpatialAtomAlignment | |
| reset() | CDPL.Chem.SpatialAtomAlignment | |
| setEntity3DCoordinatesFunction(Atom3DCoordinatesFunction func) | CDPL.Chem.SpatialAtomAlignment | |
| setEntityMatchFunction(ForceField.InteractionFilterFunction2 func) | CDPL.Chem.SpatialAtomAlignment | |
| setEntityPairMatchFunction(ForceField.InteractionFilterFunction4 func) | CDPL.Chem.SpatialAtomAlignment | |
| setEntityWeightFunction(ForceField.MMFF94AtomChargeFunction func) | CDPL.Chem.SpatialAtomAlignment | |
| setMinTopologicalMappingSize(int min_size) | CDPL.Chem.SpatialAtomAlignment | |
| setTopAlignmentConstraintFunction(BoolSTPairArrayFunctor func) | CDPL.Chem.SpatialAtomAlignment | |
| topAlignmentConstraintFunction (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| topMapping (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
| transform (defined in CDPL.Chem.SpatialAtomAlignment) | CDPL.Chem.SpatialAtomAlignment | static |
1.8.20
