Chemical Data Processing Library C++ API - Version 1.1.1
Biomol.hpp
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1 /*
2  * Biomol.hpp
3  *
4  * This file is part of the Chemical Data Processing Toolkit
5  *
6  * Copyright (C) 2003 Thomas Seidel <thomas.seidel@univie.ac.at>
7  *
8  * This library is free software; you can redistribute it and/or
9  * modify it under the terms of the GNU Lesser General Public
10  * License as published by the Free Software Foundation; either
11  * version 2 of the License, or (at your option) any later version.
12  *
13  * This library is distributed in the hope that it will be useful,
14  * but WITHOUT ANY WARRANTY; without even the implied warranty of
15  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
16  * Lesser General Public License for more details.
17  *
18  * You should have received a copy of the GNU Lesser General Public License
19  * along with this library; see the file COPYING. If not, write to
20  * the Free Software Foundation, Inc., 59 Temple Place - Suite 330,
21  * Boston, MA 02111-1307, USA.
22  */
23 
29 #ifndef CDPL_BIOMOL_HPP
30 #define CDPL_BIOMOL_HPP
31 
32 #include "CDPL/Biomol/PDBData.hpp"
33 #include "CDPL/Biomol/AtomProperty.hpp"
34 #include "CDPL/Biomol/MolecularGraphProperty.hpp"
35 #include "CDPL/Biomol/AtomPropertyDefault.hpp"
36 #include "CDPL/Biomol/MolecularGraphPropertyDefault.hpp"
37 #include "CDPL/Biomol/AtomPropertyFlag.hpp"
38 #include "CDPL/Biomol/PDBFormatVersion.hpp"
39 #include "CDPL/Biomol/ResidueType.hpp"
40 #include "CDPL/Biomol/ProcessingFlags.hpp"
41 #include "CDPL/Biomol/DataFormat.hpp"
42 #include "CDPL/Biomol/ControlParameter.hpp"
43 #include "CDPL/Biomol/ControlParameterDefault.hpp"
44 #include "CDPL/Biomol/ControlParameterFunctions.hpp"
45 #include "CDPL/Biomol/PDBMoleculeInputHandler.hpp"
46 #include "CDPL/Biomol/PDBMolecularGraphOutputHandler.hpp"
47 #include "CDPL/Biomol/MMTFMoleculeInputHandler.hpp"
48 #include "CDPL/Biomol/MMTFMolecularGraphOutputHandler.hpp"
49 #include "CDPL/Biomol/PDBMoleculeReader.hpp"
50 #include "CDPL/Biomol/PDBMolecularGraphWriter.hpp"
51 #include "CDPL/Biomol/MMTFMoleculeReader.hpp"
52 #include "CDPL/Biomol/MMTFMolecularGraphWriter.hpp"
53 #include "CDPL/Biomol/HierarchyViewNode.hpp"
54 #include "CDPL/Biomol/HierarchyViewModel.hpp"
55 #include "CDPL/Biomol/HierarchyViewChain.hpp"
56 #include "CDPL/Biomol/HierarchyViewFragment.hpp"
57 #include "CDPL/Biomol/HierarchyView.hpp"
58 #include "CDPL/Biomol/ResidueList.hpp"
59 #include "CDPL/Biomol/ResidueDictionary.hpp"
60 #include "CDPL/Biomol/AtomFunctions.hpp"
61 #include "CDPL/Biomol/MolecularGraphFunctions.hpp"
62 #include "CDPL/Biomol/MoleculeFunctions.hpp"
63 #include "CDPL/Biomol/UtilityFunctions.hpp"
64 #include "CDPL/Biomol/PDBGZMoleculeInputHandler.hpp"
65 #include "CDPL/Biomol/PDBGZMolecularGraphOutputHandler.hpp"
66 #include "CDPL/Biomol/MMTFGZMoleculeInputHandler.hpp"
67 #include "CDPL/Biomol/MMTFGZMolecularGraphOutputHandler.hpp"
68 #include "CDPL/Biomol/PDBBZ2MoleculeInputHandler.hpp"
69 #include "CDPL/Biomol/PDBBZ2MolecularGraphOutputHandler.hpp"
70 #include "CDPL/Biomol/MMTFBZ2MoleculeInputHandler.hpp"
71 #include "CDPL/Biomol/MMTFBZ2MolecularGraphOutputHandler.hpp"
72 #include "CDPL/Biomol/PDBGZMoleculeReader.hpp"
73 #include "CDPL/Biomol/PDBGZMolecularGraphWriter.hpp"
74 #include "CDPL/Biomol/MMTFGZMoleculeReader.hpp"
75 #include "CDPL/Biomol/MMTFGZMolecularGraphWriter.hpp"
76 #include "CDPL/Biomol/PDBBZ2MoleculeReader.hpp"
77 #include "CDPL/Biomol/PDBBZ2MolecularGraphWriter.hpp"
78 #include "CDPL/Biomol/MMTFBZ2MoleculeReader.hpp"
79 #include "CDPL/Biomol/MMTFBZ2MolecularGraphWriter.hpp"
80 
81 #endif // CDPL_BIOMOL_HPP
MMTFGZMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFGZMolecularGraphWriter.
MMTFBZ2MolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MolecularGraphWriter.
MMTFMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFMoleculeReader.
UtilityFunctions.hpp
Declaration of various utility functions.
MMTFMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFMolecularGraphOutputHandler.
PDBMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBMolecularGraphWriter.
ResidueType.hpp
Definition of constants in namespace CDPL::Biomol::ResidueType.
PDBMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBMoleculeInputHandler.
PDBData.hpp
Definition of the class CDPL::Biomol::PDBData.
MolecularGraphPropertyDefault.hpp
Definition of constants in namespace CDPL::Biomol::MolecularGraphPropertyDefault.
PDBMoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBMoleculeReader.
PDBGZMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBGZMolecularGraphWriter.
PDBMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBMolecularGraphOutputHandler.
MoleculeFunctions.hpp
Declaration of functions that operate on Chem::Molecule instances.
AtomFunctions.hpp
Declaration of functions that operate on Chem::Atom instances.
ProcessingFlags.hpp
Definition of flags for serial and residue sequence number processing.
AtomPropertyFlag.hpp
Definition of constants in namespace CDPL::Biomol::AtomPropertyFlag.
PDBBZ2MolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBBZ2MolecularGraphOutputHandler.
MMTFGZMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFGZMolecularGraphOutputHandler.
ControlParameter.hpp
Definition of constants in namespace CDPL::Biomol::ControlParameter.
PDBFormatVersion.hpp
Definition of constants in namespace CDPL::Biomol::PDBFormatVersion.
MMTFBZ2MolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MolecularGraphOutputHandler.
MMTFMolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::MMTFMolecularGraphWriter.
PDBBZ2MoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBBZ2MoleculeReader.
HierarchyViewNode.hpp
Definition of the class CDPL::Biomol::HierarchyViewNode.
AtomProperty.hpp
Definition of constants in namespace CDPL::Biomol::AtomProperty.
PDBBZ2MolecularGraphWriter.hpp
Definition of the class CDPL::Biomol::PDBBZ2MolecularGraphWriter.
MMTFBZ2MoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MoleculeInputHandler.
ControlParameterDefault.hpp
Definition of constants in namespace CDPL::Biomol::ControlParameterDefault.
ResidueList.hpp
Definition of the class CDPL::Biomol::ResidueList.
MMTFMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFMoleculeInputHandler.
HierarchyView.hpp
Definition of the class CDPL::Biomol::HierarchyView.
PDBBZ2MoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBBZ2MoleculeInputHandler.
MolecularGraphFunctions.hpp
Declaration of functions that operate on Chem::MolecularGraph instances.
AtomPropertyDefault.hpp
Definition of constants in namespace CDPL::Biomol::AtomPropertyDefault.
MMTFGZMoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFGZMoleculeReader.
HierarchyViewFragment.hpp
Definition of the class CDPL::Biomol::HierarchyViewFragment.
ResidueDictionary.hpp
Definition of the class CDPL::Biomol::ResidueDictionary.
PDBGZMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::PDBGZMoleculeInputHandler.
PDBGZMoleculeReader.hpp
Definition of the class CDPL::Biomol::PDBGZMoleculeReader.
PDBGZMolecularGraphOutputHandler.hpp
Definition of the class CDPL::Biomol::PDBGZMolecularGraphOutputHandler.
HierarchyViewChain.hpp
Definition of the class CDPL::Biomol::HierarchyViewChain.
MMTFGZMoleculeInputHandler.hpp
Definition of the class CDPL::Biomol::MMTFGZMoleculeInputHandler.
HierarchyViewModel.hpp
Definition of the class CDPL::Biomol::HierarchyViewModel.
MolecularGraphProperty.hpp
Definition of constants in namespace CDPL::Biomol::MolecularGraphProperty.
ControlParameterFunctions.hpp
Declaration of convenience functions for control-parameter handling.
DataFormat.hpp
Provides the contents of namespace CDPL::Biomol::DataFormat.
MMTFBZ2MoleculeReader.hpp
Definition of the class CDPL::Biomol::MMTFBZ2MoleculeReader.
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