ScreeningDBAccessor.hpp

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/* 
 * ScreeningDBAccessor.hpp 
 *
 * This file is part of the Chemical Data Processing Toolkit
 *
 * Copyright (C) 2003 Thomas Seidel <thomas.seidel@univie.ac.at>
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License
 * along with this library; see the file COPYING. If not, write to
 * the Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 * Boston, MA 02111-1307, USA.
 */
 
#ifndef CDPL_PHARM_SCREENINGDBACCESSOR_HPP
#define CDPL_PHARM_SCREENINGDBACCESSOR_HPP
 
#include <string>
#include <cstddef>
#include <memory>
 
#include "CDPL/Pharm/APIPrefix.hpp"
 
 
namespace CDPL
{
 
    namespace Chem
    {
 
        class Molecule;
    }
 
    namespace Pharm
    {
 
        class Pharmacophore;
        class FeatureTypeHistogram;
 
        class CDPL_PHARM_API ScreeningDBAccessor
        {
 
          public:
            typedef std::shared_ptr<ScreeningDBAccessor> SharedPointer;
 
            virtual ~ScreeningDBAccessor() {}
 
            virtual void open(const std::string& name) = 0;
 
            virtual void close() = 0;
 
            virtual const std::string& getDatabaseName() const = 0;
 
            virtual std::size_t getNumMolecules() const = 0;
 
            virtual std::size_t getNumPharmacophores() const = 0;
 
            virtual std::size_t getNumPharmacophores(std::size_t mol_idx) const = 0;
 
            virtual void getMolecule(std::size_t mol_idx, Chem::Molecule& mol, bool overwrite = true) const = 0;
 
            virtual void getPharmacophore(std::size_t pharm_idx, Pharmacophore& pharm, bool overwrite = true) const = 0;
 
            virtual void getPharmacophore(std::size_t mol_idx, std::size_t mol_conf_idx, Pharmacophore& pharm, bool overwrite = true) const = 0;
 
            virtual std::size_t getMoleculeIndex(std::size_t pharm_idx) const = 0;
 
            virtual std::size_t getConformationIndex(std::size_t pharm_idx) const = 0;
 
            virtual const FeatureTypeHistogram& getFeatureCounts(std::size_t pharm_idx) const = 0;
 
            virtual const FeatureTypeHistogram& getFeatureCounts(std::size_t mol_idx, std::size_t mol_conf_idx) const = 0;
 
          protected:
            ScreeningDBAccessor& operator=(const ScreeningDBAccessor&)
            {
                return *this;
            }
        };
    } // namespace Pharm
} // namespace CDPL
 
#endif // CDPL_PHARM_SCREENINGDBACCESSOR_HPP