29 #ifndef CDPL_FORCEFIELD_MMFF94ELECTROSTATICINTERACTIONPARAMETERIZER_HPP
30 #define CDPL_FORCEFIELD_MMFF94ELECTROSTATICINTERACTIONPARAMETERIZER_HPP
65 static constexpr
double DEF_DISTANCE_EXPONENT = 1.0;
67 static constexpr
double DEF_DIELECTRIC_CONSTANT = 1.0;
69 static constexpr
double DIELECTRIC_CONSTANT_WATER = 80.0;
72 typedef std::shared_ptr<MMFF94ElectrostaticInteractionParameterizer>
SharedPointer;
Definition of the preprocessor macro CDPL_FORCEFIELD_API.
#define CDPL_FORCEFIELD_API
Tells the compiler/linker which classes, functions and variables are part of the library API.
Type declaration of generic wrapper class types for storing user-defined interaction filtering predic...
Declaration of type CDPL::ForceField::MMFF94ElectrostaticInteractionList.
Type declaration of generic wrapper classes for storing user-defined functions for the retrieval of M...
Type definition of generic wrapper class for storing an user-defined topological atom-pair distance f...
Abstract base class for representations of a chemical structure as a graph of bonded atoms.
Definition: MolecularGraph.hpp:57
Detects and parameterizes the MMFF94 electrostatic interactions of a molecular graph.
Definition: MMFF94ElectrostaticInteractionParameterizer.hpp:61
void setDistanceExponent(double dist_expo)
Sets the exponent of the MMFF94 distance-dependent electrostatic potential.
void setDielectricConstant(double de_const)
Sets the dielectric constant used by the MMFF94 electrostatic potential.
void parameterize(const Chem::MolecularGraph &molgraph, MMFF94ElectrostaticInteractionList &ia_list, bool strict)
Perceives the MMFF94 electrostatic interactions for molgraph and outputs the corresponding parameter ...
MMFF94ElectrostaticInteractionParameterizer(const Chem::MolecularGraph &molgraph, MMFF94ElectrostaticInteractionList &ia_list, bool strict)
Constructs the parameterizer and processes the molecular graph molgraph.
void setFilterFunction(const InteractionFilterFunction2 &func)
Sets the filter function used to skip atom pairs during parameterization.
std::shared_ptr< MMFF94ElectrostaticInteractionParameterizer > SharedPointer
A reference-counted smart pointer [SHPTR] for dynamically allocated MMFF94ElectrostaticInteractionPar...
Definition: MMFF94ElectrostaticInteractionParameterizer.hpp:72
void setTopologicalDistanceFunction(const TopologicalAtomDistanceFunction &func)
Sets the function used to determine the topological distance between two atoms (number of bonds along...
MMFF94ElectrostaticInteractionParameterizer()
Constructs an MMFF94ElectrostaticInteractionParameterizer instance with default settings.
void setAtomChargeFunction(const MMFF94AtomChargeFunction &func)
Sets the function used to look up the MMFF94 partial charge of an atom.
std::function< std::size_t(const Chem::Atom &, const Chem::Atom &, const Chem::MolecularGraph &)> TopologicalAtomDistanceFunction
Generic wrapper class used to store a user-defined topological atom-pair distance function.
Definition: TopologicalAtomDistanceFunction.hpp:53
std::function< double(const Chem::Atom &)> MMFF94AtomChargeFunction
Generic wrapper class used to store a user-defined MMFF94 partial atom charge function.
Definition: MMFF94PropertyFunctions.hpp:66
std::function< bool(const Chem::Atom &, const Chem::Atom &)> InteractionFilterFunction2
Generic wrapper for storing user-defined two-atom interaction filtering functions (see [FUNWRP]).
Definition: InteractionFilterFunctions.hpp:54
The namespace of the Chemical Data Processing Library.