FragmentLibraryEntry.hpp

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/* 
 * FragmentLibraryEntry.hpp 
 *
 * This file is part of the ConfGenical Data Processing Toolkit
 *
 * Copyright (C) 2003 Thomas Seidel <thomas.seidel@univie.ac.at>
 *
 * This library is free software; you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public
 * License as published by the Free Software Foundation; either
 * version 2 of the License, or (at your option) any later version.
 *
 * This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License
 * along with this library; see the file COPYING. If not, write to
 * the Free Software Foundation, Inc., 59 Temple Place - Suite 330,
 * Boston, MA 02111-1307, USA.
 */
 
#ifndef CDPL_CONFGEN_FRAGMENTLIBRARYENTRY_HPP
#define CDPL_CONFGEN_FRAGMENTLIBRARYENTRY_HPP
 
#include <string>
#include <cstddef>
#include <cstdint>
#include <memory>
 
#include <boost/iterator/indirect_iterator.hpp>
 
#include "CDPL/ConfGen/APIPrefix.hpp"
#include "CDPL/ConfGen/ConformerDataArray.hpp"
 
 
namespace CDPL
{
 
    namespace ConfGen
    {
 
        class CDPL_CONFGEN_API FragmentLibraryEntry
        {
 
          public:
            typedef std::shared_ptr<FragmentLibraryEntry> SharedPointer;
 
            typedef boost::indirect_iterator<ConformerDataArray::const_iterator, const ConformerData> ConstConformerIterator;
            typedef boost::indirect_iterator<ConformerDataArray::iterator, ConformerData>             ConformerIterator;
 
            FragmentLibraryEntry();
 
            void setHashCode(std::uint64_t hash_code);
 
            std::uint64_t getHashCode() const;
 
            void setSMILES(const std::string& smiles);
 
            const std::string& getSMILES() const;
 
            void clearConformers();
 
            std::size_t getNumAtoms() const;
 
            std::size_t getNumConformers() const;
 
            void addConformer(const ConformerData::SharedPointer& conf_data);
 
            const ConformerData& getConformer(std::size_t idx) const;
 
            ConformerData& getConformer(std::size_t idx);
 
            ConstConformerIterator getConformersBegin() const;
 
            ConstConformerIterator getConformersEnd() const;
 
            ConformerIterator getConformersBegin();
 
            ConformerIterator getConformersEnd();
 
            ConstConformerIterator begin() const;
 
            ConstConformerIterator end() const;
 
            ConformerIterator begin();
 
            ConformerIterator end();
 
            const ConformerDataArray& getData() const;
 
          private:
            std::uint64_t      hashCode;
            std::string        smiles;
            ConformerDataArray conformers;
        };
    } // namespace ConfGen
} // namespace CDPL
 
#endif // CDPL_CONFGEN_FRAGMENTLIBRARYENTRY_HPP