CDPL::Pharm::HydrophobicFeatureGenerator Member List

This is the complete list of members for CDPL::Pharm::HydrophobicFeatureGenerator, including all inherited members.

addExcludePattern(const Chem::MolecularGraph::SharedPointer &pattern)	CDPL::Pharm::PatternBasedFeatureGenerator
addIncludePattern(const Chem::MolecularGraph::SharedPointer &pattern, unsigned int type, double tol, unsigned int geom, double length=1.0)	CDPL::Pharm::PatternBasedFeatureGenerator
AtomList typedef	CDPL::Pharm::PatternBasedFeatureGenerator	protected
calcCentroid(const AtomList &, Math::Vector3D &) const	CDPL::Pharm::PatternBasedFeatureGenerator	protected
calcPlaneFeatureOrientation(const AtomList &, Math::Vector3D &, Math::Vector3D &)	CDPL::Pharm::PatternBasedFeatureGenerator	protected
calcVecFeatureOrientation(const AtomList &, const AtomList &, Math::Vector3D &) const	CDPL::Pharm::PatternBasedFeatureGenerator	protected
clearExcludePatterns()	CDPL::Pharm::PatternBasedFeatureGenerator
clearIncludePatterns()	CDPL::Pharm::PatternBasedFeatureGenerator
clone() const	CDPL::Pharm::HydrophobicFeatureGenerator	virtual
DEF_FEATURE_GEOM	CDPL::Pharm::HydrophobicFeatureGenerator	static
DEF_FEATURE_TOL	CDPL::Pharm::HydrophobicFeatureGenerator	static
DEF_FEATURE_TYPE	CDPL::Pharm::HydrophobicFeatureGenerator	static
DEF_HYD_THRESHOLD_CHAIN	CDPL::Pharm::HydrophobicFeatureGenerator	static
DEF_HYD_THRESHOLD_GROUP	CDPL::Pharm::HydrophobicFeatureGenerator	static
DEF_HYD_THRESHOLD_RING	CDPL::Pharm::HydrophobicFeatureGenerator	static
FEATURE_ATOM_FLAG enum value	CDPL::Pharm::PatternBasedFeatureGenerator
FeatureGenerator()	CDPL::Pharm::FeatureGenerator
FeatureGenerator(const FeatureGenerator &gen)	CDPL::Pharm::FeatureGenerator	protected
generate(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm)	CDPL::Pharm::PatternBasedFeatureGenerator	virtual
GEOM_REF_ATOM1_FLAG enum value	CDPL::Pharm::PatternBasedFeatureGenerator
GEOM_REF_ATOM2_FLAG enum value	CDPL::Pharm::PatternBasedFeatureGenerator
getAtom3DCoordinatesFunction() const	CDPL::Pharm::FeatureGenerator
getChainHydrophobicityThreshold() const	CDPL::Pharm::HydrophobicFeatureGenerator
getFeatureGeometry() const	CDPL::Pharm::HydrophobicFeatureGenerator
getFeatureTolerance() const	CDPL::Pharm::HydrophobicFeatureGenerator
getFeatureType() const	CDPL::Pharm::HydrophobicFeatureGenerator
getGroupHydrophobicityThreshold() const	CDPL::Pharm::HydrophobicFeatureGenerator
getRingHydrophobicityThreshold() const	CDPL::Pharm::HydrophobicFeatureGenerator
HydrophobicFeatureGenerator()	CDPL::Pharm::HydrophobicFeatureGenerator
HydrophobicFeatureGenerator(const HydrophobicFeatureGenerator &gen)	CDPL::Pharm::HydrophobicFeatureGenerator
HydrophobicFeatureGenerator(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm)	CDPL::Pharm::HydrophobicFeatureGenerator
isContainedInExMatchList(const Util::BitSet &) const	CDPL::Pharm::PatternBasedFeatureGenerator	protected
isContainedInIncMatchList(const Util::BitSet &) const	CDPL::Pharm::PatternBasedFeatureGenerator	protected
operator=(const HydrophobicFeatureGenerator &gen)	CDPL::Pharm::HydrophobicFeatureGenerator
CDPL::Pharm::PatternBasedFeatureGenerator::operator=(const PatternBasedFeatureGenerator &gen)	CDPL::Pharm::PatternBasedFeatureGenerator
CDPL::Pharm::FeatureGenerator::operator=(const FeatureGenerator &gen)	CDPL::Pharm::FeatureGenerator	protected
PatternAtomLabelFlag enum name	CDPL::Pharm::PatternBasedFeatureGenerator
PatternBasedFeatureGenerator()	CDPL::Pharm::PatternBasedFeatureGenerator
PatternBasedFeatureGenerator(const PatternBasedFeatureGenerator &gen)	CDPL::Pharm::PatternBasedFeatureGenerator
POS_REF_ATOM_FLAG enum value	CDPL::Pharm::PatternBasedFeatureGenerator
setAtom3DCoordinatesFunction(const Chem::Atom3DCoordinatesFunction &func)	CDPL::Pharm::FeatureGenerator	virtual
setChainHydrophobicityThreshold(double thresh)	CDPL::Pharm::HydrophobicFeatureGenerator
setFeatureGeometry(unsigned int geom)	CDPL::Pharm::HydrophobicFeatureGenerator
setFeatureTolerance(double tol)	CDPL::Pharm::HydrophobicFeatureGenerator
setFeatureType(unsigned int type)	CDPL::Pharm::HydrophobicFeatureGenerator
setGroupHydrophobicityThreshold(double thresh)	CDPL::Pharm::HydrophobicFeatureGenerator
setRingHydrophobicityThreshold(double thresh)	CDPL::Pharm::HydrophobicFeatureGenerator
SharedPointer typedef	CDPL::Pharm::HydrophobicFeatureGenerator
~FeatureGenerator()	CDPL::Pharm::FeatureGenerator	inlinevirtual
~HydrophobicFeatureGenerator()	CDPL::Pharm::HydrophobicFeatureGenerator
~PatternBasedFeatureGenerator()	CDPL::Pharm::PatternBasedFeatureGenerator	virtual