| addExcludePattern(const Chem::MolecularGraph::SharedPointer &pattern) | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | addIncludePattern(const Chem::MolecularGraph::SharedPointer &pattern, unsigned int type, double tol, unsigned int geom, double length=1.0) | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | addNonPatternFeatures(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::PatternBasedFeatureGenerator | inlineprotectedvirtual | 
  | AtomList typedef | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | calcCentroid(const AtomList &, Math::Vector3D &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | calcPlaneFeatureOrientation(const AtomList &, Math::Vector3D &, Math::Vector3D &) | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | calcVecFeatureOrientation(const AtomList &, const AtomList &, Math::Vector3D &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | clearExcludePatterns() | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | clearIncludePatterns() | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | clone() const | CDPL::Pharm::PatternBasedFeatureGenerator | virtual | 
  | FEATURE_ATOM_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | FeatureGenerator() | CDPL::Pharm::FeatureGenerator |  | 
  | FeatureGenerator(const FeatureGenerator &gen) | CDPL::Pharm::FeatureGenerator | protected | 
  | generate(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::PatternBasedFeatureGenerator | virtual | 
  | GEOM_REF_ATOM1_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | GEOM_REF_ATOM2_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | getAtom3DCoordinatesFunction() const | CDPL::Pharm::FeatureGenerator |  | 
  | isContainedInExMatchList(const Util::BitSet &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | isContainedInIncMatchList(const Util::BitSet &) const | CDPL::Pharm::PatternBasedFeatureGenerator | protected | 
  | operator=(const PatternBasedFeatureGenerator &gen) | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | CDPL::Pharm::FeatureGenerator::operator=(const FeatureGenerator &gen) | CDPL::Pharm::FeatureGenerator | protected | 
  | PatternAtomLabelFlag enum name | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | PatternBasedFeatureGenerator() | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | PatternBasedFeatureGenerator(const PatternBasedFeatureGenerator &gen) | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | POS_REF_ATOM_FLAG enum value | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | setAtom3DCoordinatesFunction(const Chem::Atom3DCoordinatesFunction &func) | CDPL::Pharm::FeatureGenerator | virtual | 
  | SharedPointer typedef | CDPL::Pharm::PatternBasedFeatureGenerator |  | 
  | XBondDonorFeatureGenerator() | CDPL::Pharm::XBondDonorFeatureGenerator |  | 
  | XBondDonorFeatureGenerator(const Chem::MolecularGraph &molgraph, Pharmacophore &pharm) | CDPL::Pharm::XBondDonorFeatureGenerator |  | 
  | ~FeatureGenerator() | CDPL::Pharm::FeatureGenerator | inlinevirtual | 
  | ~PatternBasedFeatureGenerator() | CDPL::Pharm::PatternBasedFeatureGenerator | virtual |